PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931673
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 549aa    MW: 57820 Da    PI: 7.8
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931673genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30263322159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  462931673 263 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 322
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-32248322IPR003657WRKY domain
SuperFamilySSF1182901.83E-27256323IPR003657WRKY domain
PROSITE profilePS5081128.311258324IPR003657WRKY domain
SMARTSM007743.4E-37263323IPR003657WRKY domain
PfamPF031062.5E-27264322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MFKGEKKLGS HDEQLKDKIK DDDQIRDDDF FKPLEKSSTK KEVYSPSGRE SSEIMDPASK  60
QNSSLKAQNK LQEDKLASTR AEMGEVREEN ERLKKMLSRV TEDYRSLQMH FREVLQQEQA  120
KKLADTTTSL DTDIEEPGFV SLRLGTSTSI HKKEAKSSIA EGNRREELMT SIKQGGLTLG  180
LSDCKVGATN SGKIQPNVLI LSPEGSSEDA KDDAVETTDQ WPPSKTLKNA RDGDAEVEDD  240
IGPLPQVKKA RVSVRARCDA PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAAGCPVRKQ  300
VQRCADDMSI LITTYEGTHN HPLSASATAM ASTTSAAASM LTSGSSTSLP SLGFPTAAAS  360
HPSSAAAGLS FGFPFSFSPS SGSPAWPAVG SAGYLSYGSP TAPSYTGASL NSINGRQQSG  420
DGLAFYQQQK ASASGSAPAG VLTDTIAKAI TSDPGFHTAL AAAITSYVGG NQGGGSSSAG  480
RDSGGLQGLR WGQHLGLGPS SSSTTTTSAA AAVAQSSRGR AFLQPSLGLS SAGSRSASTS  540
PVENREDTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202633251778Probable WRKY transcription factor 4
2lex_A2e-202633251778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980431e-71FP098043.1 Phyllostachys edulis cDNA clone: bphyem204o18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964541.10.0probable WRKY transcription factor 72
TrEMBLA0A368QQA30.0A0A368QQA3_SETIT; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-67WRKY DNA-binding protein 72