PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462932100

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 7841.19 Da PI: 10.5637

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462932100	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+ 462932100 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.207	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.69E-38	2	63	No hit	No description
SuperFamily	SSF55455	4.71E-30	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTS 60 SCNFSDLLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
1tqe_R	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
1tqe_S	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_A	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_B	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_C	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_D	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_E	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
6c9l_F	6e-21	1	63	1	63	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:16217607, ECO:0000269\|PubMed:9085264, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462932100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ512359	2e-77	DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds.
GenBank	DQ512362	2e-77	DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds.
GenBank	DQ534491	2e-77	DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds.
GenBank	EU946187	2e-77	EU946187.1 Zea mays clone 300112 mRNA sequence.
GenBank	KJ002714	2e-77	KJ002714.1 Phyllostachys edulis MADS-box protein 5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811305.1	8e-37	MADS-box transcription factor 5-like
Swissprot	A2Y9P0	1e-37	MADS5_ORYSI; MADS-box transcription factor 5
Swissprot	Q0DEB8	1e-37	MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBL	A0A3Q8B9J5	1e-35	A0A3Q8B9J5_DENLA; MADS5
TrEMBL	Q6J555	1e-35	Q6J555_DENLA; MADS16 protein
TrEMBL	X2FD64	1e-35	X2FD64_9POAL; MADS-box protein 5
STRING	BRADI1G48520.1	4e-36	(Brachypodium distachyon)
STRING	Pavir.J35684.1.p	7e-37	(Panicum virgatum)
STRING	Si007226m	4e-36	(Setaria italica)
STRING	Sb10g004390.1	4e-36	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-34	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164]