PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932115
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 824aa    MW: 92446.9 Da    PI: 7.6496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932115genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071707729121
                EEET..TTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                y C    C++sF+++ +L  H +
  462932115 707 YACDieGCDMSFRTQNDLLLHKK 729
                789999***************87 PP
2zf-C2H2110.0014762784323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   C+k+F+ +   + H+r+H
  462932115 762 CTyeGCDKTFKWPWARTEHMRVH 784
                88889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.1707729IPR015880Zinc finger, C2H2-like
SMARTSM003558.7730754IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863730759IPR007087Zinc finger, C2H2
PROSITE patternPS000280732754IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-5732758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-10747788No hitNo description
Gene3DG3DSA:3.30.160.602.7E-10759784IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489760789IPR007087Zinc finger, C2H2
SMARTSM003559.8E-4760784IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280762784IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-8778812No hitNo description
Gene3DG3DSA:3.30.160.602.1E-9785813IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845790821IPR007087Zinc finger, C2H2
SMARTSM003551.1790816IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280792816IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MKSDDITNRI AERHEMVPPR GHASGTDDNM INSISLAQVS DKCGELYSST HECPSALGLL  60
ASAYDSSDSD EETAGNISID SEKYDAADGS TNIQSSGALV LQKSNVHCQE KCEERIAPSL  120
MNPAENTSML MTRASRETDI SHFAVLGQPP TSYEQWSSYL DLDDAITTSS VNASSDTSLS  180
TGKGSIVPDA LAMYTKDSCK MHVFCLEHAL ETWTQLQPIG GANIMLLCHP EYPRAESAAK  240
VIAEEIGMKH AWKDVTFKEA TVEEIGVIQS ALQDEDTEPT SSDWAVKMGI NIYYSAKQSK  300
SPLYSKQIPY NSIIYKAFAQ ENPDSCTDDE GQRSGTTKKK VAGWWCGKVW MSNQVHPLLA  360
REHEEQNHDM VYSKAIFSAT SHDKIKEPSA RSTALIRRSL SKRLSGRKQK NSVEKSQARK  420
KRCTASDEPN LHHSRIGVIS EANQDQARNF DDYYKPDDGY ESEEAPNTQQ YQHHELQNMN  480
ERSSSKKRKG DKRDHFHELH DENGDIDCKL DIDSIINTTI GDWNNSPSEF GVVEVKSGVK  540
LQGSKGKSSK CKTGEDLSNG NKKLRKMEKK TSTKKQKSDK TNRQFRENHT EDLDLVHDGD  600
EATQDSWDQI PQQKTDDAKV KSRGKIKNVK EKASKCQSSG NKEGNFSCNT ESNRGDGAIT  660
DNWDEIPKAT TDDVKVKSRG KIQSGKQKAI KREASDGLRH GKKGTKYACD IEGCDMSFRT  720
QNDLLLHKKD ICPVKGCGKK FFCHKYLLQH RKVHLDERPL MCTYEGCDKT FKWPWARTEH  780
MRVHTGVRPY ACTEPGCTQT FRFVSDFSRH KRKTGHSSDK KRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-5470782323139Lysine-specific demethylase REF6
6a58_A2e-5470782323139Lysine-specific demethylase REF6
6a59_A2e-5470782323139Lysine-specific demethylase REF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932115
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301716.10.0lysine-specific demethylase JMJ705
TrEMBLA0A0A9BB410.0A0A0A9BB41_ARUDO; REF6
STRINGGRMZM2G431157_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-57relative of early flowering 6