PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462932362

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 249aa MW: 27652 Da PI: 9.0569

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462932362	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.8e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ 462932362 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-29	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.392	14	74	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.0E-24	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.04E-16	18	73	IPR009057	Homeodomain-like
Pfam	PF00249	6.5E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SSSNSSTHQA SHQKLTSTTA SNSKRVFLNR EGRCFYAPHD GNAAADSDKN 120 IYTMLRNCSH ASPCQLPSLK EVFSMWEQSR GRVPRHSNVL TTEKAIRPSH TFNKKPEKQK 180 SCDLTLSIGP WGDASSDADG SSTISEELAS QPRGESFGSS ATGDCFAAVK QESIPALNLD 240 LTMSSSWLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462932362

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956037	6e-87	EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966301.1	1e-117	uncharacterized protein LOC101769616
TrEMBL	A0A1E5VP04	1e-119	A0A1E5VP04_9POAL; Uncharacterized protein
STRING	Si007179m	1e-116	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-26	G2-like family protein