PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932680
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 199aa    MW: 21523 Da    PI: 4.632
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932680genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.42.7e-1666161694
      NF-YB   6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                ++lP a v r++k  l + a        + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl + l+++r+ +
  462932680  66 EELPKAIVRRLVKDKLAQIAggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLGTSLQEFRNKN 161
                679999999999998875331122222589***************************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-3361195IPR009072Histone-fold
PfamPF008085.7E-1067138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.15E-2668192IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
PILLGFAVCA SSVPFITTAT TSSSPSQERG TMAGEATKES EPQPQAAQAQ DKTAPASAPM  60
TEAEVEELPK AIVRRLVKDK LAQIAGGEGA EVIVNKDAMA AFAESARIFI HYLSATANDM  120
CKESKRQTIN ADDVLKALDE MEFSEFVEPL GTSLQEFRNK NAGKRSEANK KQKEKRRKLN  180
EEALPHQEND AADDAENGD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-130BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-130EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-130EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-130KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.13e-83DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS43e-89A0A0A9GDS4_ARUDO; Uncharacterized protein
STRINGPavir.Bb01701.1.p3e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-36nuclear factor Y, subunit B11