PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933062
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 211aa    MW: 22856.9 Da    PI: 8.4714
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933062genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.23e-1099119121
       GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                C+ C+ttkTplWR gp+g+k 
  462933062  99 CADCHTTKTPLWRGGPEGPKA 119
                ******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-591117No hitNo description
SMARTSM004017.0E-593134IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.77693116IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-798118IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.8E-899120IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
LRPPLSSVSL VTQTEGVKLK PLLDFSIAFA SPALPPSSIY PTSPQSNPHP LPRPSSRSSI  60
KDWISAADQE NMEAEMETDP ISPSPDDTTT ASGGEAKACA DCHTTKTPLW RGGPEGPKAL  120
GLDANAEPQD QQQKKKAAAA ASSSKEDKKK EDKEEEGDKK KQVTVELRVV GFGKEVMLKQ  180
RRRMRRKKCL SEEERAAVLL MSLSSGVIYA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185QRRRMRR
2180187RRRMRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.12e-44GATA transcription factor 15-like
TrEMBLA0A0A9NUC31e-61A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGPavir.Eb04066.1.p4e-43(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-11GATA transcription factor 15