PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462933074

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 26207.3 Da PI: 6.5155

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462933074	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k 462933074 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 109 45589***********************************************99 PP
2	HD-ZIP_I/II	116	2.2e-37	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l 462933074 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLENEVLRLKERLV 146 9**************************************************************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.39	51	111	IPR001356	Homeobox domain
SMART	SM00389	9.7E-17	54	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.52E-16	55	113	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-16	56	109	IPR001356	Homeobox domain
CDD	cd00086	4.06E-16	56	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-18	56	109	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEQYDEHQQL FASSFVDSSL LAPNGAAQGE RPRARRRRRR AARCADGGEV DAGDPKKRRL 60 SDEQVEMLEL SFREERKLET GRKVHLASEL GLDPKQVAVW FQNRRARHKS KLLEEEFAKL 120 KQAHDAAILH KCHLENEVLR LKERLVVAEE ELTRLRSAGS HSHAVSGDGG DVMGGRVVCS 180 GSPSSSFSTG TCQQPGVGGV DRLGDDDLIY VPDVADYGYS DNSVVEWFSL YGLGLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	39	RPRARRRRRR
2	34	42	RRRRRRAAR
3	37	58	RRRAARCADGGEVDAGDPKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462933074

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039959	1e-177	BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds.
GenBank	EU953626	1e-177	EU953626.1 Zea mays clone 1440579 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657887.1	1e-101	PREDICTED: homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	2e-94	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A1Y0YXT2	1e-101	A0A1Y0YXT2_9POAL; Homeodomain leucine zipper protein class 1
STRING	Pavir.J09638.1.p	1e-107	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-40	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]