PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933244
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 253aa    MW: 27560.7 Da    PI: 9.6899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933244genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-1070113553
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                h+e+ErrRR+riN  +++Lr+++P       k ++Ka+ L ++ve +k 
  462933244  70 HSEAERRRRERINAHLATLRRMIPDT-----KQMDKATLLARVVEQVKA 113
                9************************9.....67********99997775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-1257123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.12665114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-870113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-1370126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-4157221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAACQPLQEG KELQPYDGCD PSAYRGPVLL PRQASSVPPP SVMVRPPEMS SSSGSGSARS  60
ATDAKALKIH SEAERRRRER INAHLATLRR MIPDTKQMDK ATLLARVVEQ VKAMKRKASE  120
ATQSMSLPPE TNDVSIECHA GDAPGIAGDK IIYIKASISC EDRPDLIAGL IQAFHGLRLR  180
AVRADMTSLG GRVQHVFILC KEEGSQGASL RSLKEAVRQA LSKVACPETV YGNSPFQSKR  240
QRILESHYSI MSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968277.11e-124transcription factor bHLH30
RefseqXP_004968280.11e-124transcription factor bHLH30
TrEMBLA0A1E5WEY01e-128A0A1E5WEY0_9POAL; Transcription factor bHLH51
STRINGLPERR01G03590.11e-124(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-30bHLH family protein