PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933854
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1273aa    MW: 140797 Da    PI: 6.8233
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933854genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.24.2e-55541712118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e +krwl+++ei++iL n++ ++++ e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr+yw
  462933854  54 LSEaQKRWLRPTEICEILSNYKFFSIAPEPPNMPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYW 153
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                lLee++++ivlvhylevk
  462933854 154 LLEEDFTHIVLVHYLEVK 171
                ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.12750176IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7553171IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-4956170IPR005559CG-1 DNA-binding domain
CDDcd001020.00249497590No hitNo description
Gene3DG3DSA:2.60.40.101.8E-7498586IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.24E-17498589IPR014756Immunoglobulin E-set
PfamPF018333.9E-7498586IPR002909IPT domain
CDDcd002041.94E-12669791No hitNo description
SuperFamilySSF484038.08E-16678793IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-17689797IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.82699793IPR020683Ankyrin repeat-containing domain
PfamPF127963.9E-6705794IPR020683Ankyrin repeat-containing domain
SMARTSM002480.21732761IPR002110Ankyrin repeat
PROSITE profilePS500889.992732764IPR002110Ankyrin repeat
SMARTSM00248990771800IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.6E-17895982IPR020683Ankyrin repeat-containing domain
SMARTSM000150.045905927IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791906935IPR000048IQ motif, EF-hand binding site
PfamPF006120.007907926IPR000048IQ motif, EF-hand binding site
SMARTSM00248990962991IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-810901147IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.04510961118IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.79110971126IPR000048IQ motif, EF-hand binding site
PfamPF006120.00710981117IPR000048IQ motif, EF-hand binding site
SMARTSM000150.01211191141IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.24911201144IPR000048IQ motif, EF-hand binding site
PfamPF006126.9E-411221141IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1273 aa     Download sequence    Send to blast
RRPRVPPPFP XXXRATARAS CFGGGGGAFD RGGAMAEARK FVMPGQPPDF SQLLSEAQKR  60
WLRPTEICEI LSNYKFFSIA PEPPNMPASG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK  120
EAHEKLKAGS IDVLHCYYAH GEENENFQRR TYWLLEEDFT HIVLVHYLEV KGGKQSLNRA  180
KEEIMQFSNV DSPSYSNSIT SHSQVTPQNM DAAESPISGH ISEFGDTKPA KFGAADNSGA  240
SSRYHPLAEM QQPLDGVIMD DLLYPPASII GNRKGYHGEM LPRTSNLDYH SFSHHDIARL  300
FEDAGTGPGD VSRTLFDSVP FNETLTDYPN GFTEPALHSS FASLEASSLE DTSRLQSFTS  360
EALYTNHLSQ KEIEALYANH LSQKEPDALS FAGISSPEPE VNGNRYTEGS INHPLLKQSS  420
LDLLKIESTG LKKHDSFSRW MSKELAGVVD LDIKSSSDTL WSSIETVNVS DGSSVLTNEQ  480
LGAYVVSPSL SQDQLFSILD VSPSCAYIGL NTKVMVTGTF LVNKEHVEKE HVEKCTWSCM  540
FGDVEVPAEV LNDGTLRCYA PAHQSGRVPF YVTCSNRVAC SEVREFEYRD SDAQYMETSH  600
SQAIGVNEMH LHIRLEKLLS LGPENNVLSS GNEKHELMNA INSLMLDGKW SDQESPSVKE  660
KFSTARDQGM EKLVKEKLHY WLLCKINDDG KGPNVLCKEG QGVIHLVAAL GYDWAIRPII  720
VAGVNVNFRD AHGWTALHWA ASLGRERTVG ILIANGAAAG ALTDPTSEFP AGRSPADLAS  780
ANGHKGIAGF LAESALTSHL SALTIRESKD NAVDACGSLV ADDLNDTDSA QLAGDDYHTE  840
SLKGSLSAVR KSTQAAARIF QAFRVESFHR KKVVEYGDDD CGLSDERTLS LVSLKNVKAG  900
QHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQRTV GILIANGAAA GALTDPTSEF  960
PAGRSPADLA SANGHKGIAG FLAESALTSH LSALTIRESK DNAVDACGSL VADDLNDTDS  1020
AQLAGDDYHT ESLKGSLSAV RKSTQAAARI FQAFRVESFH RKKVVEYGDD DCGLSDERTL  1080
SLVSLKNVKA GQHDTHLHSA AVRIQNKFRG WKGRKEFMII RQRIVKLQAH VRGHQVRKNY  1140
RKVVWSVGIV EKVILRWRRK RTGLRGFRPD KQLEGSSEIQ PAKAEDDYDF LHDGRKQAEA  1200
RLQRALARVH SMSQYPEARE QYNRLTTCVA EMKQARIMQD EMLNESAVPD GNDFMAGLED  1260
LICRDDAAMS AIW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316757.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLC5WXQ80.0C5WXQ8_SORBI; Uncharacterized protein
STRINGSb01g033650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein