PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934117
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 235aa    MW: 26295.7 Da    PI: 7.0325
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934117genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.46.4e-18521282298
      NF-YC  22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  arikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  462934117  52 WWARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 128
                569*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-2354127IPR009072Histone-fold
PfamPF008088.7E-1754113IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.14E-1960130IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRKKLGTRFP AAVLCNWDSM MRRASRIRSH AAVCTLEVWF VVSWVYESMY FWWARIKKIM  60
QADEDVGKIA LAVPVLVSRA LELFLQDLID RTYEITLQSG AKTLNSFHLK QCVKRYSSFD  120
FLTEVVNKVP DLGGADSCGD ERGLPRRRKS NGSDPENDES RSSKMAIRSS LSPRGRGRGR  180
AAPAPATSSK VDEANTDHHA DWPMPDAIGN IGVGPSGFGH LTVQVDEDED YDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-20511131274Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144148PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627541e-127BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds.
GenBankEU9646891e-127EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds.
GenBankJX4284441e-127JX428444.1 Zea mays subsp. mays clone pUT3038 CA5P8 CCAAT-HAP5 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159016.13e-91repressor protein
TrEMBLB6TI747e-90B6TI74_MAIZE; Nuclear factor Y subunit C11
TrEMBLK0DCL17e-90K0DCL1_MAIZE; CA5P8 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G105317_P031e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-44nuclear factor Y, subunit C11