PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462934221

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 97aa MW: 11217.8 Da PI: 10.0867

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462934221	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.9	3.2e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W++ ++ g++R++k+c++rw +yl 462934221 14 KGPWTPEEDQKLMDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.2	9	65	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-25	12	60	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-19	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-22	15	77	IPR009057	Homeodomain-like
CDD	cd00167	5.59E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-5	61	76	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLMDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF TQEEEHLASP FRTKSTRMKG SYFSADT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-14	12	77	25	89	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462934221

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP330481	3e-62	KP330481.1 Triticum aestivum MYB transcription factor SM152-2 mRNA, complete cds.
GenBank	KP330482	3e-62	KP330482.1 Triticum aestivum MYB transcription factor SM152-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953959.1	1e-49	transcription factor MYB16
Refseq	XP_027093449.1	2e-49	transcription factor MYB93-like
Refseq	XP_027149898.1	2e-49	transcription factor MYB93
Swissprot	Q9S9Z2	5e-48	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A200PXH6	2e-48	A0A200PXH6_9MAGN; SANT/Myb domain
STRING	Pavir.J03585.1.p	7e-49	(Panicum virgatum)
STRING	Si017785m	5e-49	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-50	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]