PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934239
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 381aa    MW: 42825.8 Da    PI: 8.5824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934239genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002793115323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+  +Cgk+F + s L++H  +H
  462934239  93 CSyeNCGKTFVDVSALRKHAHVH 115
                77779**************9887 PP
2zf-C2H2201.8e-06120144123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                y C+  +Cgk F ++s LkrH  tH
  462934239 120 YICQepNCGKKFVDSSKLKRHYLTH 144
                889999****************999 PP
3zf-C2H220.61.2e-06150174123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + Cp  dCgk Fs   nL++H++tH
  462934239 150 FICPhpDCGKAFSLDFNLRSHLKTH 174
                78**********************9 PP
4zf-C2H212.40.00049180204123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + Cp   Cgk F++   Lk H + H
  462934239 180 HICPfpACGKKFTSDFKLKAHVKAH 204
                5799999***************998 PP
5zf-C2H214.97.8e-05241266123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++Cp   C+k + +++ L+ H++t H
  462934239 241 FVCPyeGCDKAYIHHYKLNLHLKTmH 266
                89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-1386115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01391115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.38591120IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-894144No hitNo description
Gene3DG3DSA:3.30.160.602.1E-13116140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.233120149IPR007087Zinc finger, C2H2
SMARTSM003550.0015120144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-12131183No hitNo description
Gene3DG3DSA:3.30.160.604.9E-18141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0019150174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.196150179IPR007087Zinc finger, C2H2
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-8178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.021180204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93180209IPR007087Zinc finger, C2H2
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-9237266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.54E-6237265No hitNo description
SMARTSM003550.007241266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702241271IPR007087Zinc finger, C2H2
PROSITE patternPS000280243266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MNGRKKSVLL RRAAPQPYSY SHSHAQAHVR RPPRPAARWV KQWLPQDLAS SGGKCSLFKW  60
VRADGHKSSK ENPKVLEAES PKPEPTSEIL FLCSYENCGK TFVDVSALRK HAHVHGERQY  120
ICQEPNCGKK FVDSSKLKRH YLTHTGQKDF ICPHPDCGKA FSLDFNLRSH LKTHALENYH  180
ICPFPACGKK FTSDFKLKAH VKAHEKTGTP VAVQHTPPPE KPQSTMKSST PAPASYADRP  240
FVCPYEGCDK AYIHHYKLNL HLKTMHPDHR QEENGKHTAP SGQHAVNEPT YQYNYAEIGD  300
HAPNPKRNKP SSSHKVSSSK VYNVKVSSAM PADITGVKNQ WSGKATYEDD SEETEEDPGN  360
NLEGGWQYGN NADDEETPDE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-34932068119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136556.10.0uncharacterized protein LOC100216676
TrEMBLA0A3L6EAM60.0A0A3L6EAM6_MAIZE; Putative zinc finger protein
TrEMBLB4FJ720.0B4FJ72_MAIZE; C2H2 transcription factor
STRINGGRMZM2G175000_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-101C2H2 family protein