PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934815
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 205aa    MW: 22719.7 Da    PI: 8.4887
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934815genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.2e-1972126256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +k+ ++tkeq + Le+ F+ ++ +s++++ eLA++++Lt rqV vWFqNrRa+ k
  462934815  72 KKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTK 126
                678899***********************************************98 PP
2HD-ZIP_I/II116.91.2e-3772160189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLE++F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL+ e  eL++
    462934815  72 KKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCESLTDENQRLKLELMELQQ 160
                  59*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1957127IPR009057Homeodomain-like
SuperFamilySSF466891.03E-1962129IPR009057Homeodomain-like
PROSITE profilePS5007117.58968128IPR001356Homeobox domain
SMARTSM003893.3E-1570132IPR001356Homeobox domain
CDDcd000861.06E-1472129No hitNo description
PfamPF000463.9E-1672126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
SMARTSM003404.2E-15128171IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-9128159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MYSPSCMEEE DLGAWLGLGI GGGGCALKKG RGDHKQAVMT EKGTRKKLKI IDDSRSSRGP  60
RPSEEEDDSS TKKKLRLTKE QSTLLEDTFH AHNILSHAQK HELARQVNLT PRQVEVWFQN  120
RRARTKLKQT EVDCELLKRC CESLTDENQR LKLELMELQQ SSSAAAGLYV QFPRAAAGAV  180
SICPSCEKIT MTSGGDTSKS SSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076TKKKLRL
2120128RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.15e-81homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F63e-61HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX71e-79A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m5e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-45homeobox from Arabidopsis thaliana