PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462935287
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 303aa    MW: 33396.7 Da    PI: 7.9163
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462935287genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY80.55e-25198197159
      YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                s e+ + +  e+    p v++PP +rqr Psayn+fikeei+rika +P i+h++afsaa+kn
  462935287  19 SGENTEVEAAEDFVVFPAVNKPPVRRQRTPSAYNCFIKEEIRRIKARDPGITHKQAFSAASKN 81 
                444556777788888899********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-213081IPR006780YABBY protein
CDDcd002008.58E-5983299No hitNo description
Gene3DG3DSA:2.130.10.105.0E-6183299IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.27E-6083299IPR017986WD40-repeat-containing domain
SMARTSM003201.2E-1086126IPR001680WD40 repeat
PfamPF004008.5E-788126IPR001680WD40 repeat
PROSITE profilePS5029441.4293303IPR017986WD40-repeat-containing domain
PROSITE profilePS5008215.28793135IPR001680WD40 repeat
PRINTSPR003207.4E-8113127IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780113127IPR019775WD40 repeat, conserved site
SMARTSM003201.1E-10129168IPR001680WD40 repeat
PfamPF004001.0E-7130168IPR001680WD40 repeat
PROSITE profilePS5008216.457136177IPR001680WD40 repeat
PRINTSPR003207.4E-8155169IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780155169IPR019775WD40 repeat, conserved site
SMARTSM0032013171211IPR001680WD40 repeat
SMARTSM003205.3E-5214256IPR001680WD40 repeat
PfamPF004007.6E-7215256IPR001680WD40 repeat
PROSITE profilePS5008211.411221265IPR001680WD40 repeat
PRINTSPR003207.4E-8243257IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780243257IPR019775WD40 repeat, conserved site
SMARTSM003201.6E-4259300IPR001680WD40 repeat
PfamPF004003.6E-5261299IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMKQEPGVDT PPRESDESSG ENTEVEAAED FVVFPAVNKP PVRRQRTPSA YNCFIKEEIR  60
RIKARDPGIT HKQAFSAASK NPDPVTDRCV RVLKGHTNFV FSANFNPQTS SQVASGGFDC  120
TVRIWDVKSG RCTRAIDAHS DPVTSVHFIR DGSIIVSGSH DGSCKIWDAK TGACIKTVID  180
DKKPAVSFSM FSPNGKFILV AMLDDSLKLC NFATGKFLKV YTGHVNRVYC IQSAFSVTNG  240
KYIVSGSEDN CVYIWDLQGR NILQKLEGHT DTVVSVSCHP TENKIASGGL DNDRTVRLWV  300
QDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gnq_A2e-997630224335WD-repeat protein 5
2xl2_A2e-997630222333WD REPEAT-CONTAINING PROTEIN 5
2xl2_B2e-997630222333WD REPEAT-CONTAINING PROTEIN 5
2xl3_A2e-997630222333WD REPEAT-CONTAINING PROTEIN 5
2xl3_B2e-997630222333WD REPEAT-CONTAINING PROTEIN 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462935287
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930700.0FP093070.1 Phyllostachys edulis cDNA clone: bphyem124h07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801078.11e-157COMPASS-like H3K4 histone methylase component WDR5B
SwissprotQ9SY001e-115WDR5B_ARATH; COMPASS-like H3K4 histone methylase component WDR5B
TrEMBLA0A3L6T9Y31e-155A0A3L6T9Y3_PANMI; Uncharacterized protein
STRINGPavir.Bb03147.1.p1e-157(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.18e-19YABBY family protein
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Zhang Y, et al.
    Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
    Plant Cell, 2008. 20(6): p. 1437-55
    [PMID:18552200]