PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462935386
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 106aa    MW: 11284.6 Da    PI: 11.1927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462935386genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.5e-202368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEdell  av+++G+++W+ I  +++ gR++k+c++rw + 
        462935386 23 KGSWTAEEDELLRAAVARHGPRNWSVIGGEVP-GRSGKSCRLRWCNQ 68
                     799*****************************.***********985 PP
2Myb_DNA-binding23.71.2e-077599126
                     TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWkt 26
                     r ++T+eEd l+v a++++G++ W+ 
        462935386 75 RRAFTPEEDALIVAAHARYGNR-WRV 99
                     678*******************.*85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.531873IPR017930Myb domain
SuperFamilySSF466894.31E-2320102IPR009057Homeodomain-like
SMARTSM007173.2E-162271IPR001005SANT/Myb domain
PfamPF002493.6E-192368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242481IPR009057Homeodomain-like
CDDcd001673.14E-162567No hitNo description
PROSITE profilePS512948.77675106IPR017930Myb domain
PfamPF002492.0E-57598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-782103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MVDVVAGNNA GASRSGSGAG RVKGSWTAEE DELLRAAVAR HGPRNWSVIG GEVPGRSGKS  60
CRLRWCNQLS PGVERRAFTP EEDALIVAAH ARYGNRWRVT ARATGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-232297378MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-22229757132MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-22229757132MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-232297378C-Myb DNA-Binding Domain
1msf_C4e-232297378C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462935386
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698542e-57EU969854.1 Zea mays clone 336503 mRNA sequence.
GenBankKJ7276592e-57KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439611.12e-45myb-related protein 330
SwissprotO231602e-35MYB73_ARATH; Transcription factor MYB73
TrEMBLC5YWC04e-44C5YWC0_SORBI; Uncharacterized protein
STRINGSb09g016570.16e-45(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-35myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]