PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462935425
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 311aa    MW: 32424.9 Da    PI: 9.5673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462935425genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        462935425 139 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 183
                      6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.8774896IPR017877Myb-like domain
SMARTSM00717495297IPR001005SANT/Myb domain
CDDcd001671.00E-45594No hitNo description
PROSITE profilePS5129416.605132188IPR017930Myb domain
SuperFamilySSF466892.17E-16134189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17136186IPR006447Myb domain, plants
SMARTSM007179.3E-11136186IPR001005SANT/Myb domain
CDDcd001673.54E-10139184No hitNo description
Gene3DG3DSA:1.10.10.601.0E-10139182IPR009057Homeodomain-like
PfamPF002493.6E-11139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
FGLLPPPSQR SLARVAQRHR DGHEPGLAQR RRDARVYPAR QPWPSTSSGE EGAGAWTREQ  60
EKAFENAVAT MAEDDDEGDA RWEKIAELVE GKTADEEGGG GGGGGGGGGS GKKGSGGGGG  120
HGEKGSAKSA EQERRKGIAW TEDEHRLFLL GLEKYGKGDW RSISRNFVIS RTPTQVASHA  180
QKYFIRLNSM NRERRRSSIH DITSVTNGDA SAAQGPITGT NGQAANPGKS SKQSPQTANT  240
PPGVDAYGTT IGQPVGGPLV SAVGTPVTLP VPAPPHMAYG MHAPVPGAVV PGAPVNIAPM  300
PYPMPPPSSH G
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462935425
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794430.0HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960078.11e-133transcription factor SRM1
SwissprotQ9FNN66e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0A9DCA71e-135A0A0A9DCA7_ARUDO; Uncharacterized protein
STRINGSi022762m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-65MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]