PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936157
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 287aa    MW: 31301.7 Da    PI: 7.1689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936157genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v ++G g W++I +          R+  ++k++w++
        462936157  5 KQRWTSEEEAALRAGVGRHGVGKWRAILKDPHfgstlRCRSNVDLKDKWRN 55
                     79***************************98888*9989999*******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.011161IPR017930Myb domain
SuperFamilySSF466899.72E-15363IPR009057Homeodomain-like
SMARTSM007176.2E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-12556IPR009057Homeodomain-like
PfamPF002492.4E-6556IPR001005SANT/Myb domain
CDDcd116601.35E-19657No hitNo description
PROSITE profilePS5150421.583103176IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.4E-7106171IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.63E-12106179IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-14106177IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.9E-9115169IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGPPKQRWTS EEEAALRAGV GRHGVGKWRA ILKDPHFGST LRCRSNVDLK DKWRNMNVTK  60
KIQSTPKDGD HAMAITTVTS DIDNEIVDVK PIAAVPSEAL NASNPKKSQL RLDMIIMEAV  120
KKLNEPTGSH RTSIANYIEE QYWPSSDFEH SLSAVLKDLT ADGKLIKVKR KYWIAPSSPL  180
LEERSPKMLL LEDVQAKPFR IGGDDSRTLT RSLVDAELAR MATMTAEEAA AAAARAVEEA  240
EAIMAEAEAA AKEAEAAEAD AHAAQALAKE ATLALKNRNA TKLVAQA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936157
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794227e-53HF679422.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB16 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796390.11e-125single myb histone 6 isoform X2
SwissprotC0HIA31e-118SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2T8I1B51e-123A0A2T8I1B5_9POAL; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-51telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]