PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462936202

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 214aa MW: 23818 Da PI: 9.3857

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462936202	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	4e-49	9	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lp+GfrF+Ptdeelv +yLk+k++g +++ i++vd+ +ePwdLp k +k+++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ + s+ g 462936202 9 LPVGFRFRPTDEELVRHYLKPKIAGLPHPDLLLIPDVDLSACEPWDLPaKaLIKSDDPEWFFFAHLDRKYPGGHRSNRSTAAGYWKATGKDRLIRSRpAG 108 79***********************999889**********95346777888**********************************9899 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l+g+kktLvf++grap+g++t W+mheyr 462936202 109 NLIGIKKTLVFHRGRAPRGHRTAWIMHEYRT 139 99*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-56	6	160	IPR003441	NAC domain
PROSITE profile	PS51005	54.291	9	160	IPR003441	NAC domain
Pfam	PF02365	1.4E-26	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSSPAAAPLP VGFRFRPTDE ELVRHYLKPK IAGLPHPDLL LIPDVDLSAC EPWDLPAKAL 60 IKSDDPEWFF FAHLDRKYPG GHRSNRSTAA GYWKATGKDR LIRSRPAGNL IGIKKTLVFH 120 RGRAPRGHRT AWIMHEYRTT EPHLQQGQHG SFVLYRLFNK NEEEEEAPVG SSNLEDADSP 180 STSAPAISPV VKPPKLARRP LVANDDDPAA PQVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-44	9	166	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-44	9	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-44	9	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-44	9	166	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-44	9	166	20	174	NAC domain-containing protein 19
3swm_B	5e-44	9	166	20	174	NAC domain-containing protein 19
3swm_C	5e-44	9	166	20	174	NAC domain-containing protein 19
3swm_D	5e-44	9	166	20	174	NAC domain-containing protein 19
3swp_A	5e-44	9	166	20	174	NAC domain-containing protein 19
3swp_B	5e-44	9	166	20	174	NAC domain-containing protein 19
3swp_C	5e-44	9	166	20	174	NAC domain-containing protein 19
3swp_D	5e-44	9	166	20	174	NAC domain-containing protein 19
4dul_A	6e-44	9	166	17	171	NAC domain-containing protein 19
4dul_B	6e-44	9	166	17	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462936202

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813332.1	1e-107	uncharacterized protein LOC112890695
Swissprot	F4JN35	2e-63	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2S3HMK8	1e-107	A0A2S3HMK8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E457	1e-106	A0A2T7E457_9POAL; Uncharacterized protein
STRING	Sb10g000101.1	1e-108	(Sorghum bicolor)
STRING	GRMZM2G163914_P02	1e-105	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13413	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	9e-66	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]