PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936353
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 156aa    MW: 16683 Da    PI: 9.744
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936353genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-1976109134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cgt +Tp+WR+gp+g ++LCnaCG++yr  +
  462936353  76 CRHCGTDETPQWRKGPEGAPSLCNACGMRYRAGK 109
                *******************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-1670124IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.86470106IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-1570109IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-1672133No hitNo description
CDDcd002026.16E-1575125No hitNo description
PfamPF003201.7E-1776109IPR000679Zinc finger, GATA-type
PROSITE patternPS00344076101IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEVAAAGGEE EELEWLSNKD AFPTVDTMAP PAEAGLVATA LPQTTKGVLQ PGAWSPPPAV  60
SPRPRAPAKP KAGRRCRHCG TDETPQWRKG PEGAPSLCNA CGMRYRAGKL LPEYRPAKSP  120
TFSPVLHSNR HRRVVELARR REVESAKASP AAAAAD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685360.15e-51GATA transcription factor 5-like
TrEMBLA0A368SJS61e-49A0A368SJS6_SETIT; Uncharacterized protein
STRINGSi039011m6e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.13e-24GATA transcription factor 14