PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936362
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 93aa    MW: 10692.3 Da    PI: 10.1239
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936362genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.3e-202859132
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32
               C++Cg+ +Tp+WR+gp+g++tLCnaCG++yr 
  462936362 28 CRHCGAEETPQWRQGPEGPRTLCNACGVRYRA 59
               ******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-152181No hitNo description
PROSITE profilePS5011411.8332258IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-162276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-152659IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.10E-122776No hitNo description
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PfamPF003201.2E-172859IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGFRDYYTTP VYKDLQLPAA AAGKQKQCRH CGAEETPQWR QGPEGPRTLC NACGVRYRAG  60
LLLPAYRPLR SPTFSPELHT NVRRRIVEMC RRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594258.16e-32GATA transcription factor 1-like
SwissprotQ8LAU94e-30GATA1_ARATH; GATA transcription factor 1
TrEMBLI1H9U02e-29I1H9U0_BRADI; Uncharacterized protein
STRINGBRADI1G75420.13e-30(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-32GATA transcription factor 1