PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936425
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 132aa    MW: 14451.2 Da    PI: 8.4839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936425genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-096587527
               --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                C++f rtGtCkyGd+C++ H++
  462936425 65 VCHHFVRTGTCKYGDSCRYFHPK 87
               5********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.6E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.11E-15448No hitNo description
PfamPF062206.5E-11539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.2816088IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-46287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-76489IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-76587IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-66586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTAA ARKRHLQGAQ HQRARAAWYD AIRHQDQHGG AASLLLPDGT  60
LSKGVCHHFV RTGTCKYGDS CRYFHPKPDG VNPALAAPGN ILGGHTSWGN LPPSLQPPPE  120
GGYPPLPFVD WG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279921e-86KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455379.12e-82zinc finger CCCH domain-containing protein 3 isoform X2
RefseqXP_004967856.12e-82zinc finger CCCH domain-containing protein 3
SwissprotQ0JP118e-58C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3L6SGJ34e-85A0A3L6SGJ3_PANMI; Shaggy-related protein kinase alpha
STRINGPavir.Eb00973.1.p5e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]