PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462936464

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 497aa MW: 53324.6 Da PI: 8.7039

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462936464	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62.5	8.2e-20	328	377	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+r + s +AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 462936464 328 KPRRCWAPELHRRRCS------SSAVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 377 79********9655......4779**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	326	380	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-9	326	379	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-15	328	377	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
GNPPPHIHVR SHRSISFRPS VPIHHPHTLP VCLLPSCVRI RAERFASYAT PRPRFPSPLP 60 LLPCLLVSSL LGACRTTTTG GQSILALSTE MEMDPPPPVH ATGRRRCREY VLALEEERRK 120 IQVFQRELPL CLDLVTQTIE RMRSQMDGVG SEETVSDHGP VLEEFMPLKP SLSLSSSEEH 180 DSARDAGGVV VGKKEEDAPE TRPADAKRAT PDWLQSVQLW SQEPQHQRAS SPHKELPCKP 240 VALNARKAGG AFQPFEKEKR GVELPSSSTT AAASSAVVGD SSGDNKAASV DDDDTEKHNS 300 DKQEEASNNK DAAKGKDKEG QSSSSNRKPR RCWAPELHRR RCSSSAVATP KQIRELMKVD 360 GLTNDEVKSH LQKYRLHARR PNSTVQSSSA SAAPPAPQFV VVGGIWVPPP EYAAAAAAAA 420 AAAQPPVQLA ADASGSASTV YAPVATLPSG AQPQSQQKQQ LVQRQPSRCS DGRRSGSTGD 480 ASSASPAVSS SSQTTSA

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

GNPPPHIHVR SHRSISFRPS VPIHHPHTLP VCLLPSCVRI RAERFASYAT PRPRFPSPLP  60
LLPCLLVSSL LGACRTTTTG GQSILALSTE MEMDPPPPVH ATGRRRCREY VLALEEERRK  120
IQVFQRELPL CLDLVTQTIE RMRSQMDGVG SEETVSDHGP VLEEFMPLKP SLSLSSSEEH  180
DSARDAGGVV VGKKEEDAPE TRPADAKRAT PDWLQSVQLW SQEPQHQRAS SPHKELPCKP  240
VALNARKAGG AFQPFEKEKR GVELPSSSTT AAASSAVVGD SSGDNKAASV DDDDTEKHNS  300
DKQEEASNNK DAAKGKDKEG QSSSSNRKPR RCWAPELHRR RCSSSAVATP KQIRELMKVD  360
GLTNDEVKSH LQKYRLHARR PNSTVQSSSA SAAPPAPQFV VVGGIWVPPP EYAAAAAAAA  420
AAAQPPVQLA ADASGSASTV YAPVATLPSG AQPQSQQKQQ LVQRQPSRCS DGRRSGSTGD  480
ASSASPAVSS SSQTTSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462936464

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-165	transcription factor NIGT1
Swissprot	Q6Z869	1e-128	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	1e-176	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	9e-62	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]