PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936503
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 306aa    MW: 33660.9 Da    PI: 12.3889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936503genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.5e-26160218259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  462936503 160 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 218
                699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.75E-24158220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26158220IPR003657WRKY domain
SMARTSM007743.2E-31159219IPR003657WRKY domain
PROSITE profilePS5081129.126160220IPR003657WRKY domain
PfamPF031061.7E-22161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
RRQETGLPAL ATPPPRRLFV RNLPRRRRRR HRGQRRRCRS GRQTAPVAAR ASSSLSAAGR  60
KEAPSRAMYG LDYLDLDRKP FLLPPATAPS RVAGDDAREV MISFPAASVA STSGMQSTAV  120
PPGRKGAAAR TTRPKRSSKK SQLKKVVREM PVADGGVSSS DPWAWRKYGQ KPIKGSPYPR  180
GYYKCSSMKG CMARKLVERS PAKPGVLIVT YMAEHCHPVP TQLNALAGTT RHSKPCFVDQ  240
EPRTAAGHCR RRRQQRGGVG RGVRRRSRGA SCRVGRRRGR VLARGDGPGR AVGARGRRLR  300
FRACTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-19140221280Disease resistance protein RRS1
5w3x_D8e-19140221280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12029RNLPRRRRRR
22431RRRRRRHR
32938RHRGQRRRCR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769245e-97AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969219.15e-80probable WRKY transcription factor 65
TrEMBLA0A1E5UWP37e-81A0A1E5UWP3_9POAL; WRKY transcription factor 22
STRINGSi001863m2e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-35WRKY family protein