PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462936521

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 162aa MW: 18663.5 Da PI: 12.3453

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462936521	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.6	4.2e-33	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y+++ d++++ +++w +++nsfvv+d+ f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll +i 462936521 25 FVAKTYQMVCDPRTDAFVRWGRENNSFVVVDPAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 112 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ 462936521 113 RRQKR 117 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.9E-49	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.5E-35	23	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.08E-33	23	114	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.6E-16	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.2E-29	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-16	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-16	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDGLHTELAL GLIRFGGAGG AGAPFVAKTY QMVCDPRTDA FVRWGRENNS FVVVDPAGFS 60 QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR IVRRQKRRRA 120 SPATVPITTI IRTTRRRRRR RWHLRCSGCG RSRRPSGRSW PG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-23	16	114	19	129	Heat shock factor protein 1
5d5v_B	1e-23	16	114	19	129	Heat shock factor protein 1
5d5v_D	1e-23	16	114	19	129	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	138	RRRASPATVPITTIIRTTRRRRR
2	131	140	RTTRRRRRRR
3	134	140	RRRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462936521

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069479	1e-120	AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636084.1	6e-70	heat stress transcription factor C-1a
Swissprot	Q6VBA4	5e-71	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A0D9V342	7e-69	A0A0D9V342_9ORYZ; Uncharacterized protein
STRING	LPERR01G20050.1	1e-69	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-43	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]