PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936584
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 174aa    MW: 19090.5 Da    PI: 6.749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936584genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS59.19.6e-19175268343
       GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                +dsle+++p++s+e+  +Er+  gr+iv++v+c  ae+ er+et ++W +r+++aGF+pv++s+++a+++++llr+
  462936584   1 MDSLEESFPKTSNEKLALERA-AGRAIVDLVSCPAAESAERRETGASWARRMRAAGFSPVAFSDDIADDMRSLLRR 75 
                59*******************.****************************************************97 PP
2GRAS72.11e-2278173284374
       GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                 +Er   gr+iv++v+c  ae+ er+et ++W +r+++aGF+pv++s+++a+++++llr++  +g+++ e         + ++l Wkd+p+v++SaWr
  462936584  78 ALERS-AGRAIVDLVSCPAAESAERRETGASWARRMRAAGFSPVAFSDDIADDMRSLLRRYR-EGWSLREPgadvdgaAAGAFLAWKDQPVVWTSAWR 173
                56777.9******************************************************9.99999977777766688899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.361147IPR005202Transcription factor GRAS
PfamPF035143.3E-16175IPR005202Transcription factor GRAS
PfamPF035143.5E-2078173IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDSLEESFPK TSNEKLALER AAGRAIVDLV SCPAAESAER RETGASWARR MRAAGFSPVA  60
FSDDIADDMR SLLRRKLALE RSAGRAIVDL VSCPAAESAE RRETGASWAR RMRAAGFSPV  120
AFSDDIADDM RSLLRRYREG WSLREPGADV DGAAAGAFLA WKDQPVVWTS AWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-321174366474Protein SHORT-ROOT
5b3h_B4e-321174312420Protein SHORT-ROOT
5b3h_E4e-321174312420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936584
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983931.11e-53protein SHORT-ROOT 2
SwissprotA2YN562e-49SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A1E5WBK01e-54A0A1E5WBK0_9POAL; Protein SHORT-ROOT 2
STRINGSi034653m1e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5108622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.15e-32GRAS family protein