PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936596
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 557aa    MW: 59020.5 Da    PI: 6.4211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936596genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.71.1e-142253242106
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaN 99 
                 +lLlecA+av+++d +++q+l++ l+el ++ +g+  + +         arl++s++++ ++l++ ++++++  e++  + l f+e+sP+  f+h++aN
  462936596 225 SQLLLECARAVAAHDSQRVQQLMWMLNELgVAVRGRGPEAVG------VFARLTSSGPRTLRTLSAAADRNTS-FESTRRVALrFQELSPWASFGHVAAN 317
                589**************************9999999888765......458*************999998555.4444444445**************** PP

       GRAS 100 qaIleav 106
                 aIle++
  462936596 318 GAILESF 324
                *****87 PP
2GRAS275.1e-09352385110142
       GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRp.egppsl 142
                +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l
  462936596 352 TRLHILDLSDTFCTQWPTLLEALATRSsDDTPHL 385
                799***********************97778887 PP
3GRAS26.95.8e-09438473108142
       GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRp.egppsl 142
                   r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l
  462936596 438 PPARLHILDLSDTFCTQWPTLLEALATRSsDDTPHL 473
                45799***********************97778887 PP
4GRAS28.12.5e-09492554185249
       GRAS 185 rledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                +l+dl+l++L + +    + alaVn+v +l          + +rd++L  +++l+P+vv+vve+ead++
  462936596 492 DLADLDLDALGLFRdattNAALAVNCVNALRAGS------ARRRDAFLASIRRLEPRVVTVVEEEADLT 554
                577888999977776666999******9887765......55699*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.955198557IPR005202Transcription factor GRAS
PfamPF035143.9E-12225324IPR005202Transcription factor GRAS
PfamPF035141.8E-6352385IPR005202Transcription factor GRAS
PfamPF035142.0E-6438473IPR005202Transcription factor GRAS
PfamPF035148.8E-7492554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MCGSGSSSSS TTTTTGLKAT NNCSLEVRMD TLFRLVSLHH QQQQQQQPQA YPSPDQLHHH  60
HQQQQSPYYS SSSRSSTGSP SSTTHNYYNS NSHSNYYYPA SSAGGGGGYC YFQEQPAGTY  120
LHEECGNNEH RFYMDEDFSS SSSSRQFQSS GGGAQQPPSS SPPPVHATTT PPPPSTSSTQ  180
HGLFEAADFS FPSVDIDLDF SSGGGSPASS SAASASASGA GRWASQLLLE CARAVAAHDS  240
QRVQQLMWML NELGVAVRGR GPEAVGVFAR LTSSGPRTLR TLSAAADRNT SFESTRRVAL  300
RFQELSPWAS FGHVAANGAI LESFLLLPEA NAGGGGGGGG ASSSASSEQA PTRLHILDLS  360
DTFCTQWPTL LEALATRSSD DTPHLSPRRT ATWTRSWPVR AADVVGPAHP AHPSFLLLPD  420
QNAGGGASAS ASSETTAPPA RLHILDLSDT FCTQWPTLLE ALATRSSDDT PHLSRGSWAC  480
PSPSASCTTR GDLADLDLDA LGLFRDATTN AALAVNCVNA LRAGSARRRD AFLASIRRLE  540
PRVVTVVEEE ADLTRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-3621838581230Protein SHORT-ROOT
5b3h_B3e-3621838527176Protein SHORT-ROOT
5b3h_E3e-3621838527176Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860695e-49BT086069.2 Zea mays full-length cDNA clone ZM_BFc0110J05 mRNA, complete cds.
GenBankKJ7270155e-49KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670524.17e-91protein SHORT-ROOT 1
SwissprotA2XIA85e-86SHR2_ORYSI; Protein SHORT-ROOT 2
SwissprotQ75I135e-86SHR2_ORYSJ; Protein SHORT-ROOT 2
TrEMBLA0A060D7Z42e-89A0A060D7Z4_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A3L6G1W82e-89A0A3L6G1W8_MAIZE; Protein SHORT-ROOT 1
STRINGGRMZM2G019060_P013e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.13e-38GRAS family protein