PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937052
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 107aa    MW: 11640.1 Da    PI: 10.6157
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937052genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.41e-1230682357
               SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               r+p+ae++e++A +l     ++ ++V++WFqN++a++++
  462937052 30 RTPNAEQIEQIAGRLrehgPIEAKNVFYWFQNHKARQRQ 68
               89***************999*****************97 PP
2Wus_type_Homeobox72.94.9e-2427692264
  Wus_type_Homeobox 22 sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +GlrtPn+e+i++i+ +L+e+G ie kNVfyWFQN+kaR+rqk
          462937052 27 HGLRTPNAEQIEQIAGRLREHGPIEAKNVFYWFQNHKARQRQK 69
                       69****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-83076IPR009057Homeodomain-like
PfamPF000462.5E-103068IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-53172IPR009057Homeodomain-like
PROSITE profilePS500718.7623269IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MEMPQGGGEA AAGQPDQGAG GGAGGAHGLR TPNAEQIEQI AGRLREHGPI EAKNVFYWFQ  60
NHKARQRQKE KQDSFAYFSR LLRRPPPLPV VFARPPGQAP PYPLGRA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902353e-62AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370093e-62BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540623e-62EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283843e-62KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017700538.12e-27WUSCHEL-related homeobox 5-like
SwissprotA2WWU75e-25WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ6X7K13e-25WOX2_ARATH; WUSCHEL-related homeobox 2
SwissprotQ8LR865e-25WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A0Q3S8612e-26A0A0Q3S861_SETIT; Uncharacterized protein
TrEMBLA0A2H3ZWL44e-26A0A2H3ZWL4_PHODC; WUSCHEL-related homeobox 5-like
STRINGPavir.Eb03715.1.p4e-27(Panicum virgatum)
STRINGGRMZM2G108933_P017e-26(Zea mays)
STRINGGSMUA_Achr10P26570_0012e-26(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-22WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]