PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937180
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 151aa    MW: 17008.9 Da    PI: 7.9126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937180genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.9e-223091259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
               +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++dp +  +tY +eH+++
  462937180 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHTCN 91
               8***************************99999*******8752679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-241691IPR003657WRKY domain
SuperFamilySSF1182903.01E-232391IPR003657WRKY domain
PROSITE profilePS5081116.4212493IPR003657WRKY domain
SMARTSM007742.3E-322992IPR003657WRKY domain
PfamPF031068.9E-263090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSPAPSSHQT HMNSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN  60
MNCPATKQVQ QKDHSDPPLY AVTYYNEHTC NSAFLPLSPS EFQLQTSSGK AVSICFDSSA  120
PQEPTECHDA FAGAAGAVPE EVVDAGRFGA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-153090968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586231e-170KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467942.12e-84probable WRKY transcription factor 47
TrEMBLA0A3L6TES96e-86A0A3L6TES9_PANMI; Putative WRKY transcription factor 35
STRINGSb01g036870.17e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-20WRKY DNA-binding protein 46