PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462937511

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 166aa MW: 18260.8 Da PI: 6.9611

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462937511	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	126.1	4e-39	11	165	223	373
GRAS 223 erdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 e ++Lk vk +sP vv+v+e+e +++ ++ +r+ a+++ysa+f++lea++p+ s+er vE+e+lgrei ++a +g + + le+W 462937511 11 ELAAFLKWVKAMSPAVVTVAEREPTGGGGwedradELPRRVEAAMDHYSAVFEALEATVPPGSRERLLVEQEVLGREIDAALAPSGGR---WWRGLERWG 107 4678*****************665544455566*********************************************9998...7899* PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ ++aGF p pls +a +qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W 462937511 108 AAARAAGFAPRPLSAFALSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSW 165 ******************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	18.877	1	145	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-36	11	165	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MFLHKLGGPD ELAAFLKWVK AMSPAVVTVA EREPTGGGGW EDRADELPRR VEAAMDHYSA 60 VFEALEATVP PGSRERLLVE QEVLGREIDA ALAPSGGRWW RGLERWGAAA RAAGFAPRPL 120 SAFALSQARL LLRLHYPSEG YLVQEARGAC FLGWQTRPLL SVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-16	4	165	213	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462937511

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437271.2	4e-86	LOW QUALITY PROTEIN: protein MONOCULM 1
Swissprot	Q84MM9	1e-81	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	C0JA42	2e-89	C0JA42_ORYPU; Monoculm1
TrEMBL	E5L8B8	2e-89	E5L8B8_9POAL; CRT protein
STRING	MLOC_76302.1	9e-92	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-37	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]