PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937971
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family DBB
Protein Properties Length: 199aa    MW: 21681.8 Da    PI: 8.7582
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937971genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.6e-0698139439
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                  C+ +e  e++  C  ++  lC+ C    H        H +
  462937971  98 VLCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHHR 139
                57******99*******************9955677888554 PP
2zf-B_box27.46.8e-09150191338
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                ++ C+ ++e ++ +fC +++ llC++C ++ Hk       H+
  462937971 150 APSCDICQECHAYFFCVEDRALLCRSCDVAVHKAnafvsaHR 191
                5789***9988*********************8766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.70895142IPR000315B-box-type zinc finger
SMARTSM003366.0E-1095142IPR000315B-box-type zinc finger
CDDcd000213.34E-598142No hitNo description
SMARTSM003366.2E-12148195IPR000315B-box-type zinc finger
PfamPF006431.0E-7150190IPR000315B-box-type zinc finger
CDDcd000211.92E-7151195No hitNo description
PROSITE profilePS501199.172153195IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKRRRIRVSL AAFTTPAFER NICTAGGGRL PLTSQPPGGR EGRDADRTHR DPSRQPTSAS  60
DKTASSSSPI HSHPSIHPVH GGRPRRRTLT ELVDEMKVLC SACEAAEARV LCCADEAALC  120
ARCDRDVHAA NRLAGKHHRL PLLPPAAVTA PSCDICQECH AYFFCVEDRA LLCRSCDVAV  180
HKANAFVSAH RRFLLTGVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115KRRRI
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937971
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424801e-133BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642771e-133BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668551e-133BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
GenBankEU9643641e-133EU964364.1 Zea mays clone 278314 B-box zinc finger family protein mRNA, complete cds.
GenBankHQ8588001e-133HQ858800.1 Zea mays clone UT1887 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266566.22e-61ORPHAN transcription factor
SwissprotQ9SYM25e-44BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0A9CG962e-63A0A0A9CG96_ARUDO; Uncharacterized protein
STRINGPavir.Eb00238.1.p4e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-44light-regulated zinc finger protein 1