PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938068
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 193aa    MW: 20918.8 Da    PI: 10.5928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938068genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-211261255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  462938068 12 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 61
               7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-331170IPR001471AP2/ERF domain
CDDcd000181.71E-321270No hitNo description
SMARTSM003804.8E-381275IPR001471AP2/ERF domain
PROSITE profilePS5103224.7111269IPR001471AP2/ERF domain
PfamPF008476.2E-141261IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-221270IPR016177DNA-binding domain
PRINTSPR003676.3E-121324IPR001471AP2/ERF domain
PRINTSPR003676.3E-123551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MCVSNAGGRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEDAAI AYDEAALRFK  60
GTKAKLNFPE RVQGRTDLGF LTVVPYPDLM QYAQLLQGGQ GARHQQQQQA QFMMMGGRSV  120
NMLPFGGGGA VMPPSSSFSS SAPQILDFST QQLIRPXXXM SSSGGAAPST PSSPSGASAW  180
PYGGEHNKNN KDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-271173467ATERF1
3gcc_A1e-271173467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-87EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702789.16e-67AT-rich interactive domain-containing protein 1A isoform X1
RefseqXP_012702790.16e-67AT-rich interactive domain-containing protein 1A isoform X2
RefseqXP_012702791.15e-67AT-rich interactive domain-containing protein 1A isoform X3
TrEMBLK3Y7U81e-65K3Y7U8_SETIT; Uncharacterized protein
TrEMBLK3Y7V11e-65K3Y7V1_SETIT; Uncharacterized protein
TrEMBLK3Y7W01e-65K3Y7W0_SETIT; Uncharacterized protein
STRINGSi010289m2e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-24related to AP2 6l