PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938181
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 373aa    MW: 39469.2 Da    PI: 8.8213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938181genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-063254123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462938181 32 FVCEVCNKGFQREQNLQLHRRGH 54
               89*******************88 PP
2zf-C2H212.40.00046109131123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H + +
  462938181 109 WKCDKCSKRYAVQSDWKAHSKIC 131
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-63154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-73154No hitNo description
SMARTSM003550.00413254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0943254IPR007087Zinc finger, C2H2
PfamPF121712.2E-53254IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SMARTSM0035515074104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-497130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-7104129No hitNo description
SMARTSM00355140109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSHVLLLTTL LEHPDAEVIS LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  60
KQKDPLQAQR RRVYTCPEPT CAHHDPARAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  120
QSDWKAHSKI CGTREGGAPP EFGDHGDGTG SHAFLQGKPF HGLMHLPDLQ GNGAGGQPVA  180
SSAPGLFNMG YIASSGNSSG TSSHGHASQG HMASDQFSEG GGGGHGAAAD VCDGAAPEGV  240
ADGFRHGRRV RVRGAPHGGR APMVDQSQMH LQSIMNSLAG GGGGGGMFAN SGNMIDPRLY  300
DMDDHQDVKF SQQAAGRGGA EMTRDFLGVG GGGVMRGMPV ARGEHHGGAG NMSPLEAEMK  360
SASSSFSTGG RIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-13105135333Zinc finger protein JACKDAW
5b3h_F4e-13105135333Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548641e-162AY754864.1 Zea mays INDETERMINATE-related protein 10 mRNA, complete cds.
GenBankBT0418001e-162BT041800.1 Zea mays full-length cDNA clone ZM_BFb0057K19 mRNA, complete cds.
GenBankBT0542581e-162BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691544.11e-115PREDICTED: protein indeterminate-domain 13-like
TrEMBLA0A0D3FZ121e-106A0A0D3FZ12_9ORYZ; Uncharacterized protein
STRINGOBART04G21910.11e-107(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-75indeterminate(ID)-domain 12