PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938539
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 263aa    MW: 28779.2 Da    PI: 9.5227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938539genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.63.7e-121631942556
                --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  25 psaeereeLAkklgLterqVkvWFqNrRakek 56 
                p ++++ eLA+++gL+ rqV vWFqNrRa+ k
  462938539 163 PFQAQKHELARRVGLSARQVEVWFQNRRARTK 194
                667899************************98 PP
2HD-ZIP_I/II85.95.3e-281662292790
  HD-ZIP_I/II  27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                   +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ +eLr++
    462938539 166 AQKHELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDSLTDENARLRRDLAELRAS 229
                  69***********************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.511117196IPR001356Homeobox domain
SuperFamilySSF466894.15E-12119205IPR009057Homeodomain-like
SMARTSM003894.7E-9119200IPR001356Homeobox domain
CDDcd000862.38E-8121197No hitNo description
Gene3DG3DSA:1.10.10.602.8E-15121199IPR009057Homeodomain-like
PfamPF000461.3E-9163194IPR001356Homeobox domain
PRINTSPR000317.9E-6167176IPR000047Helix-turn-helix motif
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PRINTSPR000317.9E-6176192IPR000047Helix-turn-helix motif
SMARTSM003401.6E-16196239IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-8196228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSLTTAGSS MEECSVEEFD TRLSLEVGGT SSRPSPPQRQ TVQLFGELIS PQEAALQDGD  60
HRELRAPAGK KKRTESGVVT FAAVAVSGGS RHNKKARTST QQAEEDGDRR SSQSDGGAGS  120
RKKLRLTSAQ ATMLEDSFRA HNILSHLFTF QSSDHSDRDR SLPFQAQKHE LARRVGLSAR  180
QVEVWFQNRR ARTKLKQTEV DCELLRRWCD SLTDENARLR RDLAELRASA ASTGRIPAAA  240
AAVRVVCPSC CDKKIAIVAG DVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125SRKKLRL
2188196RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938539
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.13e-75putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX63e-50HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A3L6RW692e-74A0A3L6RW69_PANMI; Putative homeobox-leucine zipper protein HOX26
STRINGSi018305m1e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-28homeobox-leucine zipper protein 17