PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462938551

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 655aa MW: 73512.9 Da PI: 6.5302

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462938551	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.7	1.2e-10	392	441	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + + +e+L ++F++n p ++ +e+L+++l+++ +++ WF+N R kek 462938551 392 IPPAAVEVLRKAFAENELPPRNVKEDLSRQLDISFEKIDKWFKNTRLKEK 441 567789******************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-11	374	441	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-11	378	441	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.572	383	443	IPR001356	Homeobox domain
SMART	SM00389	7.4E-9	385	447	IPR001356	Homeobox domain
CDD	cd00086	5.60E-9	386	441	No hit	No description
Pfam	PF00046	2.7E-8	391	441	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MDSSEKKLVC SNSGRSSQRR KQSAAKSATV STKPCRRNAP RKCKPDSRFK RSPRKVKNAT 60 LAKCIRNKYH CSPQKQQRGS DSVAGKRKRK RKRQNTDEMT RLERRAKYFL IKIKFEQNLL 120 DAYSGDGWNG QRARYFLIKI KCEQNLLDAY SGDGWNGQSR EKIKPQKELQ RAKKQIIKYK 180 IAIRDVIHQL DLSNSSGSIS DLAMPADGSV VEHDIFKEAT ETIDSEGGLD EDWLSEYSGD 240 EDYDPEENEV SSSSSRSIDS GEGVMSDGSS GSGSPLYSPN DDIPDFISAD FNDAEGLCNT 300 YLDLSVDCGD DDVPQILTYQ RPRRDVDYRR LNDEMFGKLI ENEEQSEDED WGGYKRKKRR 360 VNSAVVGVNS VEGFSNDIDG KVQKQRRKLF RIPPAAVEVL RKAFAENELP PRNVKEDLSR 420 QLDISFEKID KWFKNTRLKE KVTIQHRAKD PEQAEENSHT SPSNSSRTNE EAGISAMVDL 480 VDNSYFVPLS EIINVPARLQ KNLEKRKAES TISSLRRLHD NGSCSFPTGQ VKERPSPGNN 540 SCLGEDSSHP INTGALTCLQ GTTSPKSQSC LLTDLSHPTN NEVSCEEQVA SCMDAGISDY 600 QPFLDVIDEM CVLENRLQML RENMLSSGSV GANDESDLQN QTVVLVPAAE LKEKA

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MDSSEKKLVC SNSGRSSQRR KQSAAKSATV STKPCRRNAP RKCKPDSRFK RSPRKVKNAT  60
LAKCIRNKYH CSPQKQQRGS DSVAGKRKRK RKRQNTDEMT RLERRAKYFL IKIKFEQNLL  120
DAYSGDGWNG QRARYFLIKI KCEQNLLDAY SGDGWNGQSR EKIKPQKELQ RAKKQIIKYK  180
IAIRDVIHQL DLSNSSGSIS DLAMPADGSV VEHDIFKEAT ETIDSEGGLD EDWLSEYSGD  240
EDYDPEENEV SSSSSRSIDS GEGVMSDGSS GSGSPLYSPN DDIPDFISAD FNDAEGLCNT  300
YLDLSVDCGD DDVPQILTYQ RPRRDVDYRR LNDEMFGKLI ENEEQSEDED WGGYKRKKRR  360
VNSAVVGVNS VEGFSNDIDG KVQKQRRKLF RIPPAAVEVL RKAFAENELP PRNVKEDLSR  420
QLDISFEKID KWFKNTRLKE KVTIQHRAKD PEQAEENSHT SPSNSSRTNE EAGISAMVDL  480
VDNSYFVPLS EIINVPARLQ KNLEKRKAES TISSLRRLHD NGSCSFPTGQ VKERPSPGNN  540
SCLGEDSSHP INTGALTCLQ GTTSPKSQSC LLTDLSHPTN NEVSCEEQVA SCMDAGISDY  600
QPFLDVIDEM CVLENRLQML RENMLSSGSV GANDESDLQN QTVVLVPAAE LKEKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	RKRKRK
2	86	92	RKRKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462938551

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001357958.1	0.0	uncharacterized protein LOC100275240 isoform 1
TrEMBL	A0A3L6RQ14	0.0	A0A3L6RQ14_PANMI; Uncharacterized protein
STRING	GRMZM2G033138_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8550	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-20	pathogenesis related homeodomain protein A