PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462938999

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 326aa MW: 35336.8 Da PI: 4.445

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462938999	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1.1e-08	74	112	3	41
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ 462938999 74 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQP 112 5678*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.64E-7	67	113	IPR009057	Homeodomain-like
SMART	SM00389	0.0021	72	141	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-6	74	112	IPR001356	Homeobox domain
CDD	cd00086	2.17E-7	74	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-8	75	113	IPR009057	Homeodomain-like
Pfam	PF02183	5.3E-15	114	148	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDSGRLIFNT TGSGAGQMLF LDCGMGGPGG GGMFHRGGRP VLGLDEGRGV KRPFFTSPDE 60 LLEEEYYDEQ LPEKKRRLTP EQVHLLEKSF EEENKLEPER KTELARKLGL QPAKQLERDF 120 DRLKASFDAL RADHDALLQD NHRLRSQVRI VVSFSFVHGR APVVHVVSLT EKLQEKEEAE 180 GAASAAADFP AADVKASLAV DDAEEATAAE LAFEAHHVKS EDRLSSGSGG SAVVDADALL 240 CGGGLAAAVD SSVESYHYHD CGMGPVDHYA GEFGQSEEDD GAGSDEGCSY HADDAAAAAV 300 FFAGHAHHQH VDEEEDDGQI SWWMWN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462938999

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065267	1e-116	BT065267.1 Zea mays full-length cDNA clone ZM_BFb0074N09 mRNA, complete cds.
GenBank	BT065352	1e-116	BT065352.1 Zea mays full-length cDNA clone ZM_BFb0114N22 mRNA, complete cds.
GenBank	BT086586	1e-116	BT086586.1 Zea mays full-length cDNA clone ZM_BFc0188G07 mRNA, complete cds.
GenBank	EU961528	1e-116	EU961528.1 Zea mays clone 236181 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.
GenBank	EU961949	1e-116	EU961949.1 Zea mays clone 239214 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020408596.1	1e-134	uncharacterized LOC100191517 isoform X1
Swissprot	Q6YWR4	1e-115	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	C0PAE8	1e-133	C0PAE8_MAIZE; Homeobox-leucine zipper protein HAT5
STRING	OB02G38180.1	1e-126	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-35	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]