PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939059
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26270.9 Da    PI: 7.7314
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939059genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1894148256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  462939059  94 RKKLRLTKEQSALLENRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 148
                78889************************************************98 PP
2HD-ZIP_I/II124.16.7e-4094182190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E d+e Lkr++++l+een+rL++e ++Lr +
    462939059  94 RKKLRLTKEQSALLENRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEADCELLKRCCETLTEENHRLHRELQQLR-S 182
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-1981151IPR009057Homeodomain-like
PROSITE profilePS5007117.15190150IPR001356Homeobox domain
SMARTSM003891.3E-1592154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-1892154IPR009057Homeodomain-like
PfamPF000461.6E-1594148IPR001356Homeobox domain
CDDcd000861.17E-1794151No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
CDDcd146860.00344143185No hitNo description
PfamPF021836.2E-9150183IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.3E-18150193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEHEHEDVGL ALGLSLGSGH QAPNPSPSSQ PCALVPSLSL SLPADDGGLT TPVRPLFVAV  60
KRELPVEEDD YVMDRALYSV VSSAADDDEG CNSRKKLRLT KEQSALLENR FKEHSTLNPK  120
QKVALAKQLN LRPRQVEVWF QNRRARTKLK QTEADCELLK RCCETLTEEN HRLHRELQQL  180
RSLNQAHPAA CFMPATALSL CPSCERLASA PGATAADQPK VAGPGRAAHL FSTFTKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298SRKKLRL
2142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-118homeobox-leucine zipper protein HOX15
SwissprotQ7G7377e-81HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-117K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]