PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939137
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 283aa    MW: 31643.8 Da    PI: 8.2101
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939137genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.81.5e-57106282194374
       GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                L+  ++ a+a+n+vl+lh +++es    +   +vL++v++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr +  r+ vE++ +g e
  462939137 106 LESCKQKAVAINSVLELHCVVKESRGALN---SVLQTVRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAE 202
                5566789**************88877777...8******************************************************************* PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                i+nvv cega+r+erhe++ +Wr+r+++aGF+++p++   a++a+  l   + + gy+v ee+g+lvlgWk++p++++S+W+
  462939137 203 IRNVVGCEGAARVERHERADQWRRRMSRAGFQSMPIRM--AAKAREWLDDNAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 282
                ************************************75..4567778877776999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.8611263IPR005202Transcription factor GRAS
PfamPF035145.2E-55106282IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGISEQPCKS TPNSFATSYS YIQQNLHLAQ QDASVCADQV GLGFPYYYGN EQHDAAFDGD  60
EVELGFRASK ATRVDYVSSP YHPSWPMAHV AAESSRVRKQ RFWDVLESCK QKAVAINSVL  120
ELHCVVKESR GALNSVLQTV RKLSPRAFVL VEQDAGHNGP FFLGRFMEAL HYYAALFDAL  180
DAALPRYDAR RARVEQFHFG AEIRNVVGCE GAARVERHER ADQWRRRMSR AGFQSMPIRM  240
AAKAREWLDD NAGGGGYTVA EEKGCLVLGW KGKPVIAASC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-23110281211378Protein SCARECROW
5b3h_A4e-23110281210377Protein SCARECROW
5b3h_D4e-23110281210377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939137
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676175.21e-116DELLA protein RGL3
TrEMBLA0A3L6FNN91e-114A0A3L6FNN9_MAIZE; DELLA protein GAI1
STRINGPavir.J35085.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-33GRAS family protein