PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939155
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 231aa    MW: 25593.7 Da    PI: 6.5099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939155genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12159204655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L++l+P+     +k  + +e+L  AveYI++Lq
  462939155 159 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIRELQ 204
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.303153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15156212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-13157208No hitNo description
Gene3DG3DSA:4.10.280.105.6E-14158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MADHHGVAAT TGMGSYSHAG TDAMAHGHRR LSSQWSFSRQ DLPQISEMGM IPDIGESMVA  60
GGCNSSSDGG AQSSSYLSRN FSMNSWDDTN SIMFSSPGKK AKVDAADDMV TSFSNIDSQF  120
SLSKSSLEMS GMDDFLQLQQ DSIACRVRAK RGCATHPRSI AERERRTRIS KRLKKLQDLV  180
PNMDKQTNTS EMLDIAVEYI RELQGQVEWL PWLSIRFLGC IVDGRLQWIE G
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.11e-132transcription factor bHLH128-like
SwissprotQ8H1022e-43BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0A9DES01e-132A0A0A9DES0_ARUDO; Uncharacterized protein
STRINGPavir.J01306.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]