PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939340
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 684aa    MW: 75825.9 Da    PI: 5.647
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939340genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-1375162197
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffkv+     ++++ + +p +fa+++ ++   +   + led+ g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs f  +v++f
  462939340  75 FFKVM--MGCFSED-MDIPPPFAKTIlDLA--G-SNIYLEDSFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF--TVQMF 162
                66777..5566666.9*******9996333..3.37***************..88999999***********************9888888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2069165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-1871165IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29472165IPR003340B3 DNA binding domain
CDDcd100172.03E-1574162No hitNo description
SMARTSM010193.5E-1275165IPR003340B3 DNA binding domain
PfamPF023627.3E-1175162IPR003340B3 DNA binding domain
PROSITE profilePS5086310.066546641IPR003340B3 DNA binding domain
SMARTSM010190.045549641IPR003340B3 DNA binding domain
CDDcd100171.66E-10556639No hitNo description
SuperFamilySSF1019363.73E-12559634IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-10575636IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVEVIIALKK EQEEEGVVGI DSGDEGAGKV VKRRRKKKEC DPHKKRACVD CTKRCARIHG  60
RVSSSSRPTP EVLSFFKVMM GCFSEDMDIP PPFAKTILDL AGSNIYLEDS FGLRWRVRLC  120
LRDGVLSFGH GWKNFVLDHA VSCGEFLVFR QIARSVFTVQ MFAPSAVERL YLCERNKRQS  180
RKRKPRQKTS SPATETVKIS NNGESCKKKH RTDQVPSDCR MSVHVCIDDS DVPNSATEPK  240
CSETSEKALE AGPLESQEVS NAFTRHQGNA QRVLDGQIEI ADNCTVFTEH PIFDATEIDH  300
VQGSSLPPNV DASGPMAMMD LNEVIIDDIY LSADIYEFES GICDTEAFSV DQNKERQISD  360
GQTSGLNCLE HDLPNHHSSM GIGQGFFMSE TLPCIENKQM VDVLETCEGA GNVPAHDIDI  420
NLLPSKEPSL FGEDRSSPPT DAEVPFRECT SDSCNMDKCS CNSNQAAQKE GIVAADSAVI  480
HDKPHDGQVY MQDNKGKHAA EIMSSSPRPQ ELARPGKDPL ETGNNSGDLE SGSIESGGVL  540
ALEADGRKFC VAVPALSQTW LELPSRLPVL PRTKKQGRKV VILKDPCMRL WPVMYQCAPR  600
FSGFITGWVD LSRENSLQEG DICEFEFSGN RELSFQFTVT TSIKGKEILA LMKTSVQNTR  660
IFCHPWLHLR TILTATLPDR QPSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137KRRRKKK
23145KRRRKKKECDPHKKR
33338RRKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.10.0B3 domain-containing protein Os01g0905400 isoform X1
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A3L6RFD70.0A0A3L6RFD7_PANMI; B3 domain-containing protein
STRINGSi004140m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]