PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940225
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 587aa    MW: 62204.8 Da    PI: 7.876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940225genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31283340260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
  462940225 283 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHVTEIIYKGTHNHPK 340
                8****************************************.***************85 PP
2WRKY105.13.8e-33423481159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  462940225 423 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 481
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.71277341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28277341IPR003657WRKY domain
SuperFamilySSF1182901.96E-25279341IPR003657WRKY domain
SMARTSM007745.1E-34282340IPR003657WRKY domain
PfamPF031066.6E-24283339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37408483IPR003657WRKY domain
SuperFamilySSF1182905.75E-29415483IPR003657WRKY domain
PROSITE profilePS5081137.539418483IPR003657WRKY domain
SMARTSM007744.0E-38423482IPR003657WRKY domain
PfamPF031062.3E-25424481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDGGPEGLLP GALTGGFPPD TKGGDGNEGA KAGFGEHGFS VATSSSQEGG RSLPGTPQFG  60
QKAGAGCSLA ERMQARAGFR VPKLNMPFST AAGTDTAVSG APSPYLTIPP GLSPATLLES  120
PVFLSNTMGQ ASPTTGKLFM LGGTNDSNPN RFEGPPQGDG PGAFSFKPLD LRSSHCIADE  180
KKESSRNNQH SSLPSTQVSI KTETKVQTVQ EASMPRQLNQ QQLNDGQTTL KSSSHGSNKL  240
SRLAPDTAAV TEHVSPPDHG QPAEEGEARG DFTALATAAA PAEDGYSWRK YGQKQVKHSE  300
YPRSYYKCTH PNCQVKKKVE RSHEGHVTEI IYKGTHNHPK PAQSRRPGVP PGVDVTSAVS  360
DEVDGDRVTH GSLSQGSAGG AEGDELESKR RKLESYAIDM TGASRAVREP RVVIQTTSEV  420
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV ERASHDLKSV ITTYEGKHNH  480
EVPAARNSGH PTSAASGGAA AMADFILTAN TYGFTQMASK PRHCPSLSSS SRRTNADFDS  540
SSPVRAEQGV AAASVPFDDL CGSLPALATL SLLENALRSN DIETVVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37283484878Probable WRKY transcription factor 4
2lex_A6e-37283484878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940225
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660941e-129BT066094.1 Zea mays full-length cDNA clone ZM_BFb0304M03 mRNA, complete cds.
GenBankEU9474031e-129EU947403.1 Zea mays clone 342377 mRNA sequence.
GenBankKJ7281721e-129KJ728172.1 Zea mays clone pUT6442 WRKY transcription factor (WRKY72) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663304.10.0probable WRKY transcription factor 34
SwissprotQ6VWJ65e-92WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A060D1600.0A0A060D160_MAIZE; Putative WRKY DNA-binding domain superfamily protein (Fragment)
STRINGGRMZM2G031963_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.16e-88WRKY DNA-binding protein 34