PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940267
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 198aa    MW: 20863.8 Da    PI: 8.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940267genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-18124166248
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++
  462940267 124 CYRGVRRRP-WGKWAAEIRDPK----KaARIWLGTFVTAEDAARAYDE 166
                7********.**********94....45*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.547124182IPR001471AP2/ERF domain
PfamPF008471.0E-11124166IPR001471AP2/ERF domain
SMARTSM003804.8E-21124189IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-17124171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-25124173IPR001471AP2/ERF domain
PRINTSPR003671.7E-11125136IPR001471AP2/ERF domain
CDDcd000189.26E-18132171No hitNo description
PRINTSPR003671.7E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MQIPPTSSPA AAALPEDAEA AAIVAALVQV IADGRGATTM TPTPMPSQHA VPCSRTATFS  60
HPWDVGQALS QGVSSASADS VSAVQDGIAR SPRLLVASGT RAPISSTSSK ETELGVAAAA  120
SRRCYRGVRR RPWGKWAAEI RDPKKAARIW LGTFVTAEDA ARAYDEELLD FAKAEKLKAE  180
YTKILLNPMA MVSNILSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16115166557Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078521e-35AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
GenBankAP0056111e-35AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0057711e-35AP005771.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13.
GenBankAP0149581e-35AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-35CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3YYC08e-30K3YYC0_SETIT; Uncharacterized protein
STRINGSi019270m1e-30(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-24ERF family protein