PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940321
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 398aa    MW: 43667.7 Da    PI: 10.5788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940321genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.6e-1457101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
        462940321  57 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 101
                      8*******************************************9 PP
2Myb_DNA-binding45.81.4e-14155199347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
        462940321 155 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 199
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96850106IPR017930Myb domain
SuperFamilySSF466891.58E-1751106IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1853105IPR006447Myb domain, plants
SMARTSM007171.4E-1154104IPR001005SANT/Myb domain
CDDcd001674.04E-1057102No hitNo description
Gene3DG3DSA:1.10.10.604.1E-1257100IPR009057Homeodomain-like
PfamPF002492.5E-1257101IPR001005SANT/Myb domain
PROSITE profilePS5129418.481148204IPR017930Myb domain
SMARTSM007173.9E-11152202IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-16152204IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17154203IPR006447Myb domain, plants
CDDcd001674.04E-10155200No hitNo description
Gene3DG3DSA:1.10.10.604.9E-12155198IPR009057Homeodomain-like
PfamPF002492.3E-12155199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAAREDVMRK CKSMGNLAAA AAALDGGGAG DGYLSDGGLM QSPGKRRRAQ ERKKAVPWTE  60
EEHRTFLAGL EKLGKGDWRG IAKNFVTTRT PTQVASHAQK YFLRQTNPNK KKRRSSLFDM  120
MPSDTSQVPN YPILPTPMAK VHDVVAMTKQ LSSVPWTEEE HRTFLAGLEK LGKGDWRGIA  180
KNFVTTRTPT QVASHAQKYF LRQTNPNKKK RRSSLFDMMP SDTSQVPNYP ILPTPMAKVH  240
DVVAMTKQLQ NSKLEAVSSS NSANVSSQVG MNLPPIPSFK TTKIDSNFSK MSPMERWRTP  300
FPFRPVPRAS EGTSSIAATA NIAAMPSQTN LTACTTTFLS PKSDPSSPPL PKADHAPTEE  360
KKDLELTVGP PSQQNMTNIS SSNAVQPEVD QIINGKSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940321
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9619181e-124EU961918.1 Zea mays clone 239020 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445045.11e-117transcription factor KUA1
SwissprotQ7XC572e-41MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLC5YGT61e-115C5YGT6_SORBI; Uncharacterized protein
STRINGSb07g003330.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-38MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]