PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940372
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 369aa    MW: 40048.2 Da    PI: 7.7489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940372genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-3287143259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa d+++++i+Y+g+Hnh+
  462940372  87 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSA-DGQITQIIYRGQHNHH 143
                8****************************************.***************7 PP
2WRKY104.75e-33255313159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  462940372 255 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 313
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-2978145IPR003657WRKY domain
PROSITE profilePS5081124.44381145IPR003657WRKY domain
SuperFamilySSF1182907.19E-2684145IPR003657WRKY domain
SMARTSM007746.9E-3486144IPR003657WRKY domain
PfamPF031067.3E-2587143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-36242315IPR003657WRKY domain
SuperFamilySSF1182901.57E-29247315IPR003657WRKY domain
PROSITE profilePS5081137.172250315IPR003657WRKY domain
SMARTSM007741.0E-38255314IPR003657WRKY domain
PfamPF031061.1E-25256313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSHQQALAQV TAQAVHSPYN MVNQTDYSLP FSSTTTTSQN VSSSANVAST STKVIPIQPS  60
DTGNSNIQSN EISQPQTSAL TADKPADDGY NWRKYGQKAV KGGEYPRSYY KCTHSSCPVK  120
KKVERSADGQ ITQIIYRGQH NHHRPSKRRS KDGGELLNEG DDFRENEDAT TRSEPGSDDH  180
SGKVEASNDG PAGPSMSRRG EGGDHLSGSS DSEDEGDDES RASNGDAGPA NANKRHVPTP  240
AQRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTYQGCDVKK HIERSSQDPK  300
AVITTYEGKH SHDVPAARNS SHAAANVNAS SSSSVAHRGQ NSVSSRRRSD LQNASSASSV  360
LLKEENEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-3987316878Probable WRKY transcription factor 4
2lex_A4e-3987316878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940372
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.20.0probable WRKY transcription factor 4
SwissprotQ9ZQ702e-93WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0A9G7H50.0A0A0A9G7H5_ARUDO; Uncharacterized protein
STRINGSb01g032120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-79WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]