PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940689
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 427aa    MW: 47157.8 Da    PI: 6.8401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940689genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-082450128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     r rWT+ E++++++a k++G   W +I 
        462940689 24 RERWTEAEHKRFLEALKLYGRQ-WQRIE 50
                     78******************77.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-71863IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-72251IPR006447Myb domain, plants
SMARTSM007170.00762375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-42450IPR009057Homeodomain-like
CDDcd001670.005252664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEVNSSGEET MIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE VCIASSSWSP  60
LQIYGRERIK LQLEKEAMNN GTSPGQAHDI DIPPPRPKRK PNCPYPRKSG LSSEISNKEI  120
PNDKSTKSNM RPSNSSVEMA SDSSLQKLQR KEVSEKGSCS EVLNLFRDVP SASFSSVNKS  180
SSNHGAARGT EPTKNEIKGM ATMENNSLSI NMHEDEKQIN DQEMERLNGI HISSKCDRFD  240
EDYLDSSTQQ MKLKPMSMEA ANVDRQTSRA SHCVTERNEA VSIPVMGTEV SHPDQISDQE  300
GANGSMNPCI HPTLSVDAKF NINATPLPCP HNFAAFPPLM QCNCNQDAYR SFVNMSSTFS  360
SMLVSTLLSN PAIHAAARLA ASYWPAAESN TSIDPNQDNP AEGVQGSDIG SPPSMASMVA  420
ATVGSRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820794.10.0protein LHY isoform X1
RefseqXP_025820795.10.0protein LHY isoform X1
TrEMBLA0A2T8IF630.0A0A2T8IF63_9POAL; Uncharacterized protein
STRINGPavir.Fa01905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.14e-26circadian clock associated 1