PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462940833

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

SBP

Protein Properties

Length: 298aa MW: 31764.4 Da PI: 8.1579

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462940833	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.2	4.7e-23	38	82	34	78
EETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 34 lvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +++g qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ 462940833 38 AAAGPFQRFCQQCSRFHLLCEFDEVKRSCRKRLDGHNRRRRKPQP 82 567888************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	16.691	1	80	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.8E-21	35	85	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.5E-11	38	67	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.6E-15	38	79	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDWDAKMPSW DLGTVVGPSS GGALDLKLGG PTSWKAAAAA GPFQRFCQQC SRFHLLCEFD 60 EVKRSCRKRL DGHNRRRRKP QPDPMNPGAL FGNHHGMTRF TSYPQLFSAP SMADSKWPAT 120 TIVKAETDAF QDHYYPAVHL NNGAVSLFNG KDRKHFPFLT PHGGDAAAAL GCQPFTITPS 180 SESSSKQSNG NCALSLLSDN QTPAQLMIPT GQPLGAALHY GNVARLPDDG DVSLTGMSYV 240 SVGGKQTSIV ATSAGHTATA ASPAPATQLQ YHGYYHVNGG DQGNSDGASI QALPFSSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-15	40	79	45	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	79	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462940833

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971091.1	1e-125	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-79	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	K3XIT1	1e-124	K3XIT1_SETIT; Uncharacterized protein
STRING	Pavir.J02262.1.p	1e-125	(Panicum virgatum)
STRING	Si001804m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-21	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]