PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940970
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 831aa    MW: 93159.2 Da    PI: 5.3127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940970genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22259359198
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v
  462940970 259 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSETGEQRV 355
                99****************************96444.45569999******************************************999..447777899 PP

                EEE- CS
         B3  95 kvfr 98 
                +v+r
  462940970 356 GVRR 359
                9997 PP
2Auxin_resp91.21.7e-30385466183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F v+Y+Pr s+s+++v+++k++++ k+ + vG Rfkm+fe++d++ +++sGt+v+  dl p +W++S+W+ Lk
   462940970 385 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLESSKIGFNVGKRFKMSFEGDDVPVKKFSGTIVDKGDLAP-QWQGSEWKTLK 466
                 789********************************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-21107175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-18110176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-6114183No hitNo description
SMARTSM010190.19116215IPR003340B3 DNA binding domain
SuperFamilySSF1019368.89E-37250388IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-36253374IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-17257359No hitNo description
SMARTSM010199.9E-18259361IPR003340B3 DNA binding domain
PfamPF023623.8E-20259359IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251259361IPR003340B3 DNA binding domain
PfamPF065073.4E-26385466IPR010525Auxin response factor
PfamPF023095.4E-6722770IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-6730808No hitNo description
PROSITE profilePS5174521.172733815IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MAQAGEPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV  60
PNKILCKVVN VELKAETETD EMYAQITLQP DPDQVNLPTL PDPPLPELPR PVVHSFCKIL  120
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGMQNIYL  180
SFGQLQEPTD PALLAEQIKM FQVPNKILCK VVNVELKAET ETDEMYAQIT LQPDPDQVNL  240
PTLPDPPLPE LPRPVVHSFC KILTPSDTST HGGFSVLRRH ANECLPPLDM SMPTPTQELI  300
TKDLHGSEWR FKHIYRGQPR RHLLTTGWST FVTSKKLIAG DAFVYLRSET GEQRVGVRRL  360
VQKQSTMPAS VISSQSMHLG VLASASHAIK TNSIFLVYYR PRLSQSQYIV SLNKYLESSK  420
IGFNVGKRFK MSFEGDDVPV KKFSGTIVDK GDLAPQWQGS EWKTLKVQWD EATNFNGPER  480
VSSWEIEPFD ASAPGINIPV QPSTKNKRPR ETTESQDVHD LEPAQEFWLS GMPQQHEKAG  540
TGSSDPNCIS GHQVVWTSER PGYGAMSSSS VSQNTVVLES WLKDFNSSTK GVSPTLSDIS  600
QKLFQITSND TRVAPWPGFS AYQYEEPSSK LSCNTALCSY RTEEVTPNFP NAGEEKKEPS  660
MFRLFGVDLI NHTKSTASTD KMTAGVGDTS TRAACSYEDS GQLSALSKVT KDHTQFVNES  720
PREIQSHQSS SARTRIKVQM HGNAVGRAVD LANLYGYEQL IGELEEMFEI KDLDTKEKWK  780
IAFTNDDGDT VEIGDGPWLE FGQMVKKIVI YPIEDGRNIE PGHEQDLKTE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-127949119357Auxin response factor 1
4ldw_A1e-127949119357Auxin response factor 1
4ldw_B1e-127949119357Auxin response factor 1
4ldx_A1e-127949119357Auxin response factor 1
4ldx_B1e-127949119357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940970
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967361.10.0auxin response factor 1
RefseqXP_025816439.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2T7DTH30.0A0A2T7DTH3_9POAL; Auxin response factor
STRINGSi000540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-162auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]