PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462940994

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 859aa MW: 95734.5 Da PI: 7.0391

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462940994	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	496	547	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ 462940994 496 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 547 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	486	567	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-26	499	547	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.34E-18	744	820	No hit	No description
Pfam	PF00564	2.2E-12	749	816	IPR000270	PB1 domain
SMART	SM00666	4.6E-18	749	836	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.3E-21	749	816	No hit	No description
PROSITE profile	PS51745	18.416	749	825	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MGNSDTTSKR VEQINHKWQL HLSLDGDGTD NSSLFKERLT QALRYFKDST DQHLLVQVWA 60 PVKNGDRYVL TTSGQPFVLD HQSIGLLQYR AVSMMYMFSV DGDNAGELGL PGRVYKQKVP 120 EWTPNVQYYS SNEYPRLNHA ISYNVHGTVA LPVFDPSAQS CIAVVELIMT SKKINYACEV 180 DKVCKALEAV NLKSTEIFDH PNVQICNEGR QTALVEILEI LTVVCEEHKL PLAQTWVPCK 240 YRSVLAHGGG LKKSCLSFDG SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQRGQGV 300 PGKAFISRKP CFSKDIRQFC KLEYPLVHYA RMFGLAGCFA ICLQSSYTGH DDYILEFFLP 360 PDCIDENDQN ALLESILTRM KRCLRSLKVV GDRDLNGVSL QLGNVLKIEN DEFKKDVQYD 420 NSEGCLRESP EGDTRGRVHD FDTETKRVSN MPEGHILADD QSLDNGTSAT RPNGSSASDS 480 LLHKTNKPPE RRRGKAEKTI SLDVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP 540 SRKINKVNRS LSKLKQVIES VQGSDAAFNL TSITGPLPIP VGPSSDSLNL EKVTQSKVAE 600 LSNPTIDGDR DSCLQKSLEN DGHFGILMPQ QGFMDNNNDA QLEADKASHS RSSSGEGSIN 660 SRTSEGSCQG SPANQTFVCK PIASTFAEPQ INPEEFTKEP FQEPQLPLSR MLIEDSGSSK 720 DLKNLFTSAA DQPIFATPSN LRSMKHSGTV TIKASFKEDI VRFRFPCSGS VTVLKDEVAK 780 RLRMDVGMFD IKYLDDDHEW VKLACNADLE ECMEISYSQL LPHSRSPRLI QRSSQKSLFK 840 NHSYHYPGCS LRILAAPKI

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MGNSDTTSKR VEQINHKWQL HLSLDGDGTD NSSLFKERLT QALRYFKDST DQHLLVQVWA  60
PVKNGDRYVL TTSGQPFVLD HQSIGLLQYR AVSMMYMFSV DGDNAGELGL PGRVYKQKVP  120
EWTPNVQYYS SNEYPRLNHA ISYNVHGTVA LPVFDPSAQS CIAVVELIMT SKKINYACEV  180
DKVCKALEAV NLKSTEIFDH PNVQICNEGR QTALVEILEI LTVVCEEHKL PLAQTWVPCK  240
YRSVLAHGGG LKKSCLSFDG SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQRGQGV  300
PGKAFISRKP CFSKDIRQFC KLEYPLVHYA RMFGLAGCFA ICLQSSYTGH DDYILEFFLP  360
PDCIDENDQN ALLESILTRM KRCLRSLKVV GDRDLNGVSL QLGNVLKIEN DEFKKDVQYD  420
NSEGCLRESP EGDTRGRVHD FDTETKRVSN MPEGHILADD QSLDNGTSAT RPNGSSASDS  480
LLHKTNKPPE RRRGKAEKTI SLDVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP  540
SRKINKVNRS LSKLKQVIES VQGSDAAFNL TSITGPLPIP VGPSSDSLNL EKVTQSKVAE  600
LSNPTIDGDR DSCLQKSLEN DGHFGILMPQ QGFMDNNNDA QLEADKASHS RSSSGEGSIN  660
SRTSEGSCQG SPANQTFVCK PIASTFAEPQ INPEEFTKEP FQEPQLPLSR MLIEDSGSSK  720
DLKNLFTSAA DQPIFATPSN LRSMKHSGTV TIKASFKEDI VRFRFPCSGS VTVLKDEVAK  780
RLRMDVGMFD IKYLDDDHEW VKLACNADLE ECMEISYSQL LPHSRSPRLI QRSSQKSLFK  840
NHSYHYPGCS LRILAAPKI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462940994

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085359	0.0	BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814939.1	0.0	protein NLP3 isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3HZV8	0.0	A0A2S3HZV8_9POAL; Uncharacterized protein
STRING	Si000216m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein