PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941090
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 727aa    MW: 77305.7 Da    PI: 5.6667
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941090genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-26167253371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  462941090 167 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnnfespdpenpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 253
                689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-44161259IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.0E-38165253IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-24168253IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.25E-20168254IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.57E-41258361IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-40260373No hitNo description
SMARTSM011382.3E-60260401IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-38261374IPR014889Transcription factor DP, C-terminal
PRINTSPR004581.4E-5388400IPR002016Haem peroxidase, plant/fungal/bacterial
PfamPF001414.1E-28390529IPR002016Haem peroxidase, plant/fungal/bacterial
SuperFamilySSF481131.47E-41391563IPR010255Haem peroxidase
PROSITE profilePS5087329.883392566IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.420.103.7E-24413545No hitNo description
PRINTSPR004581.4E-5436451IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.4E-5486501IPR002016Haem peroxidase, plant/fungal/bacterial
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0042023Biological ProcessDNA endoreduplication
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
RKTGAAVLAR SRDDFFRSLH FVFLGFLLLC SPAAPSPIPR PRFAAIFVAM VSGVVDVPDE  60
DGGAPVGART SVGTPTPSGA AHSASTSAGS AGSPSSRSEQ HAPDGAGKGA AVAAAGPSAS  120
ASTPASESTF IRLNNLDING DDAPSSQAPT SKKKKRGSRA VGPDKGNRGL RQFSMKVCEK  180
VESKGRTTYN EVADELVAEF SDPNNNFESP DPENPNAQQY DEKNIRRRVY DALNVLMAMD  240
IISKDKKEIQ WKGLPRTSIS DVEELKTELV GLKGRIEKKS AYLQELQDQY VGLQNLIWRN  300
EELYGSGNTP SGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDSYVLKE  360
MRFGGQEQHD GTQEPSSNGV KFLHISTDST VYEVPTGRRD ATVSNREDAD NLPGPDIAVP  420
KVISDFAAKG FNVEEMVALL AGGHTIGSCK CFFIEADAAP IDPEYKKNIS VTCDGANRDK  480
GSVPMDLVSP NVFDGDYFAL ALAKKMPLTI DRLMGLDPGT EPVLKAFAAK PESFIPVFAK  540
AMEKLSVLKV LTGKDGEIRK SCGEFNNPQP TNEGPSVIRI SSLQPDGLSG PGAKKAGVRA  600
DSRKVNGGEA ANAGVGAEVK KEAGVEEKKT AAGAEAAGKA SNKTAEPIKA TGNKILGDEP  660
GSKLPGSVEA AKTLNEEKIE KSPKLRSGQE AATKVPGGEV ASKTARDEGD FCNFTIGYNG  720
LRYNTMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-33159258193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP