PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941137
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 1308aa    MW: 144683 Da    PI: 5.5938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941137genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001611981223123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                 ++C    C++ F ++ +L+ H r+ +
  462941137 1198 FECDidLCDMKFDTRAELNAHKRNiC 1223
                 7899999***************9877 PP
2zf-C2H214.79.2e-0512231245323
                 ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                 C+   Cgk+Fs++ +LkrH+ +H
  462941137 1223 CTddSCGKRFSSHKYLKRHQVVH 1245
                 77778***************988 PP
3zf-C2H213.40.0002312811307123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                 ykC+  dCg++F+  s++ rH ++  H
  462941137 1281 YKCSapDCGQTFRYVSDYSRHRKKfnH 1307
                 99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.1E-54283IPR003349JmjN domain
PROSITE profilePS5118311.9984384IPR003349JmjN domain
PfamPF023751.6E-84977IPR003349JmjN domain
PROSITE profilePS5118433.744226395IPR003347JmjC domain
SMARTSM005585.8E-48226395IPR003347JmjC domain
SuperFamilySSF511973.3E-27231391No hitNo description
PfamPF023734.3E-37259378IPR003347JmjC domain
SMARTSM003555911981220IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.48712211250IPR007087Zinc finger, C2H2
SMARTSM003550.09112211245IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012231245IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-612271251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.09E-1512321284No hitNo description
SMARTSM003550.001212511275IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19612511280IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-1012521275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012531275IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-612751304No hitNo description
Gene3DG3DSA:3.30.160.603.2E-1012761303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28112811308IPR007087Zinc finger, C2H2
SMARTSM003550.1212811307IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012831307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1308 aa     Download sequence    Send to blast
TRNGTRIATD TETRAHVPPT APPCRVTAHK LESTPLASPS HRIPACAHTT SEFADPIAFL  60
SRVEREAGAY GICKVIPPYQ RPSRRFVFAH LNRSLASAGS DAANPTTSAS PNPASSRSDS  120
TAVFTTRHQE LGTPQQVWQS GEQYTLEGFE AKSRAFSKSY LAGLRDPTPL EVESLFWKAS  180
EDRPIYIEYA NDVPGSGFAA PEQSRRQKKR RREGEPDDGE KGSGSRLSGS PWNLQAIARA  240
PGSLTRFMPD DVPGVTSPMV YIGMLFSWFA WHVEDHELHS LNFLHTGAAK TWYAVPGDRA  300
AELEDVIRVH GYGGDSDRLA SLAMLGEKTT LMSPEVLVAH GVPCCRLVQY PGEFVVTFPR  360
AYHVGFSHGF NCGEAANFAT PQWLKFAKEA AVRRAVMNYL PMLSHQQLLY LLAVSFIPRT  420
SSLLSGSRTS RSRDRRKEQR ELLVKQEFLH DMIGENKLLC SFLKKKPIKN VVLWEPDLLP  480
SLHSCSSGSK VLDKKSEGGC RIESQQCNHK DNISSDGTAC MTGTQSESMS TDSKPSYATA  540
ASEGKQLEGV ADDEGDLPFD LSIDSGSLTC VACGILGFPF MAILQPSREA LEDYTKLKAL  600
AISLAEEIEF QFDCTDVPLT NASKSDLQLI NISIDDEGHE EDGRDWTSQM GLNLKYCAKL  660
RKERSGNQEK PPLSFWGLFS NEPATSDAPN LKWLCRKART PYKVIGIISS SSATTTAAKV  720
EPEDTKPKGG NFENVYEEEN SQQALEQFSP LQSSIQQDSD DIANMQLCTD KEDDKKQPLV  780
DIPIAIAEYP MMQQVSEDPA NVNTCNQAIC PPDSQDSLLH ADSTFEVVRD QECVQSTVRS  840
CSTAVSVQQF VDDESVSVEG SMNCLSSHEY LESGNNTLRC RDEQLQVQQD QERTALCDNL  900
NRKAVGPCLI DSEVKCGDAV SSILANEEDC AKTSCCLDDV TENNKSLSDN EPEARDRSAD  960
RECRSTFSCL GSADAPSSTE PLSPHDLMSD ELQVDTSHSI VKSDELKNIS ASDESSQKET  1020
VQAALVSVIP KEDGQSIRSN TFDILLGALA EESKVADAPG KDEVGKASLT LMTLASNDQT  1080
SDEVTERKVV EMTKRDTTLG VTEDCRQVDQ SHDFQLSDAV SRSIGRSSRT DIICYVRRKH  1140
KRKREPGANT DSSHSVGSFV RSPCESLRPR TRPAVVEEMI TAEASTARKG KRAKMVSFEC  1200
DIDLCDMKFD TRAELNAHKR NICTDDSCGK RFSSHKYLKR HQVVHSEVRP LKCPWEGCGM  1260
TFKWLWAQTE HVRVHTGERP YKCSAPDCGQ TFRYVSDYSR HRKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-70404509381Transcription factor jumonji (Jmj) family protein
6ip4_A2e-70404509381Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111361142RRKHKRK
211371144RKHKRKRE
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985676.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLI1P7M70.0I1P7M7_ORYGL; Uncharacterized protein
STRINGORGLA03G0037300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-168C2H2 family protein