PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462941547
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 78aa    MW: 8923.87 Da    PI: 5.6357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462941547genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-093373446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +T+ E++l  + + + G++ W++Ia +++ gRt++++  +w+k
        462941547 33 FTEAEEDLVFRMHGLVGNR-WELIAGRIP-GRTAEEVEIFWYK 73
                     8******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-72977IPR001005SANT/Myb domain
PROSITE profilePS500906.2493375IPR017877Myb-like domain
SuperFamilySSF466891.09E-83375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-113373IPR009057Homeodomain-like
CDDcd001679.72E-83373No hitNo description
PfamPF002491.6E-83373IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDNSSGSQDK KSKADGRHGA KEIDSTAQNF IDFTEAEEDL VFRMHGLVGN RWELIAGRIP  60
GRTAEEVEIF WYKKHQDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462941547
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458170.16e-38MYB-like transcription factor ETC3
TrEMBLA0A2R4QNC57e-38A0A2R4QNC5_9POAL; MYB transcription factor
STRINGPavir.Eb02165.1.p8e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.17e-23MYB_related family protein